SelenoDB
Release 2.0
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Gene Report for SPG00000023_2.0
Identity
GeneSelenoprotein N (SelN)
SpeciesHomo sapiens (Human)
DescriptionUnknown function. Mutations in this gene cause the classical phenotype of multiminicore disease and congenital muscular dystrophy with spinal rigidity and restrictive respiratory syndrome. (NCBI)
FamilySelenoprotein N
Synonyms Selenoprotein N (SEPN)
SubfamilyNone
SynonymsNone
Gene IDSPG00000023
Gene release2.0
External ID ENSG00000162430.12 (Ensembl)
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A) [Report annotation error]
Curated external database annotation (GENCODE, 15) [Report annotation error]
Thermodynamic pattern-based SECIS prediction (SECISearch, 3.0) [Report annotation error]
Conceptual translation (Translate, Standard code with Sec) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

Gene
Transcript(s) Promoter(s) Protein(s) Secis
SPT00000073_2.0SPR00000096_2.0SPP00000079_2.0SPS00000023_2.0
SPT00000074_2.0SPR00000097_2.0SPP00000080_2.0SPS00000024_2.0
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.336
Middle East0.6120.498
Europe0.4890.4390.332
Central-South Asia0.5420.5050.3920.454
East Asia0.5070.4170.4360.4450.393
Oceania0.4830.3080.3310.3490.4850.597
America0.4990.2720.3290.3010.3620.4620.581

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.442
Middle East0.3570.386
Europe0.2270.0800.069
Central-South Asia0.0650.1010.0290.009
East Asia0.0000.0000.0000.0000.000
Oceania0.0820.2080.3390.1270.0350.167
America0.0010.0440.0110.0010.0000.1450.008

Low P-value

High P-value

Sequence
Sequence SEQ00000023_2.0
External ID ENSG00000162430.12 (Ensembl)
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