SelenoDB
Release 2.0
Chart Advanced
Gene Report for SPG00000029_2.0
Identity
GeneSelenoprotein S (SelS)
SpeciesHomo sapiens (Human)
DescriptionIt may regulate cytokine production, and thus play a key role in the control of the inflammatory response. (NCBI)
FamilySelenoprotein S
Synonyms Selenoprotein S (SEPS)
VCP-interacting membrane protein (VIMP)
SubfamilyNone
SynonymsNone
Gene IDSPG00000029
Gene release2.0
External ID ENSG00000131871.9 (Ensembl)
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A) [Report annotation error]
Curated external database annotation (GENCODE, 15) [Report annotation error]
Thermodynamic pattern-based SECIS prediction (SECISearch, 3.0) [Report annotation error]
Conceptual translation (Translate, Standard code with Sec) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

Gene
Transcript(s) Promoter(s) Protein(s) Secis
SPT00000094_2.0SPR00000123_2.0SPP00000100_2.0SPS00000031_2.0
SPT00000095_2.0SPR00000124_2.0SPP00000101_2.0SPS00000032_2.0
SPT00000096_2.0SPR00000125_2.0SPP00000102_2.0SPS00000033_2.0
SPT00000097_2.0SPR00000126_2.0SPP00000103_2.0N/A
SPT00000098_2.0SPR00000127_2.0SPP00000104_2.0N/A
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.409
Middle East0.6020.561
Europe0.5320.5130.528
Central-South Asia0.6270.6380.5830.653
East Asia0.6370.7010.7330.6330.366
Oceania0.3570.3740.4120.4150.5210.119
America0.3540.2620.3040.2380.2030.4670.246

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.053
Middle East0.1730.120
Europe0.0420.0070.001
Central-South Asia0.0000.0000.0000.000
East Asia0.0000.0000.0000.0000.000
Oceania0.3040.0740.0100.0030.0090.500
America0.3060.0740.0230.1420.7820.0900.494

Low P-value

High P-value

Sequence
Sequence SEQ00000029_2.0
External ID ENSG00000131871.9 (Ensembl)
Chart Advanced

© 2007-2024 SelenoDB
- A public source of selenium -