SelenoDB
Release 2.0
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Promoter Report for SPR00001178_2.0
Identity
PromotertRNA Sec 1 associated protein 1 (SECp43)
SpeciesGasterosteus aculeatus (Stickleback)
Promoter IDSPR00001178
Promoter release2.0
External IDNone
Transcript SPT00001113_2.0
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

Toolbox
Sequence
>SPR00001178_2.0 # Promoter # tRNA Sec 1 associated protein 1 (SECp43) # Stickleback (Gasterosteus aculeatus) Full length # Forward
CATTTGTTGAGTAAACCCTCAGTTTACAGCAGCGTCTTAAAATGAACGGTGAATGTGAAG
AATGTCTCTTTATGTCTCGCAGACGCAGCGTCTCAGAGCAGCAATAGTTCGATCATTGCT
TCCAGAAGACTCGTGTCCGGCTGGGCAATATGGAGCCAATTGGACATCACAATATTCTGT
TCCAACCACCTTTTTTATTGCAAAATATTTCTGTAGTAACCACAAGTTTGGATATTTGTC
AGTTGATGTATAGCACTCAAATTGTCTCAACAGTAAGTTCATTAGATTTACTAAGTTACC
AATTCCTTGACTAAAAGGAGAAACTACAAGGAAATCTATTATCCTTTTGTCTGATTAAAC
CTTTTCTCAGGTATGTTTTAATTATAGAAAAATATATTGATAGATCGATACACACACACA
CAGGACGAGTCAATAGTTTGGACACTTTGTCATTGAATGATAAAATGTGTCAAACCTTTG
ACTGGTCCTGCAGATAGAATGTTTTTGAAGCAGTACGTCCTCTGTTGGTGGTCGCTGCGT
CCCGTCCAACATGGCGTCTCGTGACTGACCGTCGTCCTCACAGAAGAAAAGCATTGGATG
TTTAGAGACCAGACCGTCCTGCGTCGGAACGCTGAGCCTCAGTACCAGTCGCGTGCTGAG
GGAAGTGGACTGTACGCGCTGGAGCACACGTGCACTTGCATGGCTTCATGCTCTGAGTTG
GTCCTTGTCCCTTGTCGGTATGGATTCACGGGGTGGAGGGGAACCTTTTAATAAATGGGA
GCTATGTGGAATCTGATGAACGGGGGGGACTCACTTGAGTCCCGGCTGTATCCGAAGACA
TTCATTCAAAATATGCGTTCAACACTGCACGCCGGGGAGCTATTTTATATCCAGTTTATT
AATGCTCAAGCATTTAGCAACACCACAAATGAGCTGAGTTCGTCTTAGATACAATCGAGG
TGTCGTTTCCCCCCAGCAGGGTGCACAACGGGGACGTGTCGCGTCTCCTTGCAGCAGGCG
GCCCAAGTGACGTCATCGGGTCCTGTGGGAATTTCTTTCAACAATGGAAGACACGAGAAG
GTCATGAAGGCCGGCAAATGTGTTCTGAATGAGGTCTGACTAATTATACATAGAAACATT
TGTCTGTTTTCCAGACATTTATTAACGCTGACATTTCAGTGCTCTGCTTTCGACCTTTCC
TGCTGCTGCAATCAGAGATAAAGGGAACACTTCAAACACACAAGATAATTGTTTAGTGTA
ATTCCAAAGACCTCTGTGGGACCTGAGAGGCAAACGGGCCATCACGAACAGAGCGATGTC
TTTTATCAGTCAAGTACACCGACCCGAAACACACCGCTCGGGCTGAAAGTCACGCAGTTC
CAACAGATCCAGGGAGGACGCCGGCCAATAAATCGCTGACGACGTGAACATGTAGAAATG
AACACATTTAAACATCGTACTGAACAACATCTGCTCCAGAGGGTTACCATGGCGATACCC
CCGCTGGGTAATTAACACTGTCGTAACACTAACCCTCAGGTGAGCTTTAATCGGCCCATG
CGCCCTAAACACACGGAACATGTCTTGTGTTGTTGCAAATGATGGCACATCAGTCTTTCG
TCTTATATAGGACATGATGGCGCACTTCAGCCTCTTGTGGCCCACAATAAAGTTTACAAC
AACAAACGCTTCTTCACCCAATTTTCTCTTGCATCCGTAAAAAAAAAATCAAAGCGGGAA
ACTGCAGCTTGTTGGGCTGGTTTCACTGACCGATAAGGAAAGATTTAAGAACACAAAATC
AGTCGGCAGCAGTTAGCGAAAGACTCCGGGGAGAGATTTCAATGCTGTGCAACAACGGTA
CCAATACTACTGTGCCAATACGTACACTGAGCAGACGGCTTGTGGAGAATGGGCCGCAGG
GTGTCCTCCATGTCTCTCCTCTGGGCTGTGAAGTCTGCCGCCTTTGGGTTTCTGACACTC
TGGATCCAGTCCGTCTTGGCAGAGCACGCACATTCACAAAATTCCTGTGCAGAGGTCAAC
CCAAGAGAAAGTCACTGATATTTATGTGGCAGGAGAGACCTGCTGGTGGGCGTGTACACA
CATCATTTTCCCCCTCGCTGCGTCTCTTAACAGCCCCAGGGCCAATTGGTCCTTCGTGAA
AATATGCACATCCACAAAAAGGACCTAAAGCAATAATCAATAATAATCCATACAAACAAA
TATTTGAGAATCCTAATGGAAAATGTGTCACCTTTTCCTCCCCTGTGAGGCTGCTCTCTG
GGTCAGAGACAAGGTCCTGAACAAAACCTACATATGTCATCAGGTCCTGTTTAGCTTCTG
CACAGAAATATAGACATTGGTCAGGAATAATGCTCATGATTACCCACCAAGCATCAGCTG
CACACACACACACACACACACACCGGCCGTGAGGAGACAGTTAGCGCACTGTGTCCTGGA
GTAGGTCTGGGCCAGGTCCACGGGGCGCTGCCCTCTGAAGGTCTTGGCCTGGAGGTCAGC
TCCCAGCTCCACCAGGGTCCCCACGATCCCCAGGTGGCCCCAGCAGGCGGCGAGGTGCAG
CGCGGTGTAACCCAAAGAGAGGAAAACATAGAAATGGCAATTCAGTAGAATAGAACAGAA
ACTAGTTCTTCTTAGTAACCACGTGGCCTGCTCACCTCGGGCCGTCCGCTCGTTGACGCG
GGCCCCGTGTCGCACCAGCTCCCGGGCGATGGCGGTCCGCCCCAACATGCAGGCGTTTAA
CAGCGCGTTTCTCCCCTCTTTGTCCTTCATGCCGAACGGATCCAGCTCCCGCGACTCGGC
GGCTGCTTCGCGCTCCAAACACCGCTGAAGAGCCTCCAGGTCTCCGGACAACACGCTTTC
AAAGACGGCCCTCTGAAACGAGGACATTATTCTGCCCCCCACACGGACGGCAATGCGCAG
TTGCCATGGTTACAGCATCACCTGCTAGCCGTTAAAACATTCAACGGTAACGTGAACTTT
TGTGGGCTATATTTATTCAACTGCGCCAAAGGACAAGGACGTGTTTGCGTGTGTCTTTCA
GTAAAATACGGTTGCTTTCAATCCCTTCAACGCTGCTTAACTCTTTAAGCTACATCAACT
GACATTCATGGCTCCGCGGGGCGCCGTGGTTCTGTGTTGAACGGTTTAACGCCCTGGACT
CTGAATCCAGCGGTCCGAGTTCAAATCTACCTTCTTTTGAGTCCCGGGAGATGGCGGCGA
TCCTTGTTTTTGTGTTTTTCACGTGTCTTCACTGGGCCTCGCGGTAGCGGGGAGACGTTT
TGAGTAAAGCCACTTTGTTGAGTGTAACTAAACTTAATCACTGAGAAAATCAACGGTTGT
TGTCTCGCGCTTAGTTTCTGAACTGGGGGTTCAGACGCCGTTACTGGTAACGTTCGCTAC
TGTAGGATATTAGAAATAAACGGACAACCCGGTTCAAAATTTAATAAAATGCATATAGTG
TACATCAGAATACAGCCATGATTCTGAAACTGTATAATCAATAAAGTAATGACAATATTG
TAAAACCACTTGAAACTGTAATCAATAGAAAAGTACTAATGTACAGTTATGATTGTATTT
AATGTAATGTAATCAACTGGAATGCATGTAATACTTGACCACACCACAACTGATATTGAC
TAAGGGACAAAAAATCCGAGTTACATTGAACTCACCAGAAGGCCACTCCCAGAGGCGTGG
ACACTAACTTTCACACCTTTACTGATCTGTATAAATATCTGTAGGCAACCATCGCTCTCT
GGAGTTCTCTGGTGGAAGCAACGGACAGGCACTATTGGGGGGGGTCCTGTTGGTTGCAAA
GACCAGCGGCGCCTCAGCTGAGATGTTCTTTTTACCACAACACCCTTCCTTTTATTAAAT
ACATTTGATTTCAACCTTCTTCGTCTGTCCGGCGTTTCTTCATTTTGAACACACCACTAC
TTTCTGTAGAATCTAAGATTGTTGTAGGAAATGTGTGTCCCCTAAAATACCCTGCGGGTT
AATTCATCATCTATGGCACTTTTAGGACAGGTTGAGGCTGGACTCGAACTGTCCAACATC
TCGACTGAACACCGGAAGTGGGACGGAATCCCCTTGAACCGGAAGCGGAACCACGAATCG
ATTTGTTTAGCGTGAACGTGCGGGGAACTTTTAGCGTTGTACGATTCTGGCCCTTTATTT
TCTCCCCAAATACACCAACGAAAACCTCCACTGTTTCCTCCGTTCCGATTCAACATGTTT
AACCGACAGACGAGCCTGTGGATGGGTGATGTATGTCTCACGTCTCTTCTCCTGGGGGCC
GTTAGCGTTAGCTTAGCTACCGGGCTGGATGCTAGCGCGGTTGGGTTACGTTAGCCCCTT
AGCCAAAAGGTTGGGCTAAACTCCGCTGCATGCGACTTGGCTGGTGGGACTTGGCGTAAT
ATAGCGCGTTTCGTAGTGCGTTAACACCTACGTTAATGCTAAAGTGGCGTCAGCTATTCG
CGGTAATGGGGCTCAAACGAGTTCCGCAGAACTCTTGAAACGTTACGCTCATCACCCTGA
AGTCCGCTTTAGCTAACCAAGTGACTTGTTTCAAGCCTAGTAAAAGTTCACTAAAACAAA
AAGCAGAGCTTTCATTACCGTAAAGTACGAGCGTGAACCAGCCGATCAAACACGTCTCTA
CTCGGGATCGGCTTTTTGAGTTCATTCATTTCATTTAGTGTATTGTGCATGCCTACTCTC
ATTGAGCCTTTTCCACCGTTACACGTTAGCCACGCACGTCTAACAATAACAACGAATACG
TAATAAAGGCTCATCTACATATTTTAAAGTGATATCTAATCTTTACCCGAATAGTTGTAC
TCGATCACGTATTAACTGAACGGGTTGCGTCAACTAACGTTACACCAATGGTTTTGTATT
AAAACCTTATATTAACAAAGATCTGTTGTTGGCTCAACGTGTACGTGATGGTGCATGTAC
AATTTCACTTGTGTGTTTAG
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