SelenoDB
Release 2.0
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Promoter Report for SPR00001280_2.0
Identity
PromotertRNA Sec 1 associated protein 1 (SECp43)
SpeciesIctidomys tridecemlineatus (Squirrel)
Promoter IDSPR00001280
Promoter release2.0
External IDNone
Transcript SPT00001215_2.0
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

Toolbox
Sequence
>SPR00001280_2.0 # Promoter # tRNA Sec 1 associated protein 1 (SECp43) # Squirrel (Ictidomys tridecemlineatus) Full length # Forward
GAATGGGCTGGACTCTAAATCAACCTCCACCTAATCCAAAACCTCTTTCTCTTTCTCATA
TTGTATCCAAGAGTTAAGCTCTCTTAAGTGCTTTGCATGCCGGACACATAATAGATACTT
TCTCTGTAAACCATTGTGATTATTGTACATTTTTTTTATTCTCTAATTATTGCCTTTCTT
TCCCCCAGCGTTGAGGATCAAGTCCAAGGCTTCACACATATATGCAAGGCAAGCACTCTA
CCACTGAGTTACAACCCTAGTCTTGCTTGTTTTCCAGGTGTTTATATTTTTATTTTACTT
GTGTAAATACCATTAGTTCAGTTCTAATATACCAGAAGTATCATCTGCTTTTGTGTATTC
AAACACATCAAGTACTTCCAATTTTGTTTACTTTTTCTTTCTCCAAACTGGATTGGTTAC
CCCAAAACAAATGTGATCATAGTATAACATTGTTCAACTACAAGAAATATTTGCAAAGTC
ATAATGTAAATGTTAATAGTGCTTTAACAAAAATTAGAAGATGGAGAATTGTGTATAGGG
ACCAAACTACAAATGAAGAGACAGTAGCATAGTATGTTATTTAGAAATATGCAGATAGAT
TCAGGAAAAAGATTCGGAAATAGTCACTTTAAGGGAGTGGAAGTTGGGGGCAAGGATAGG
TAGTGTTTTGCTTAGGTCATAAATTCATCAAATAGGGGCTGGGGATGTGGCTCAAGCGGT
GGCGTGCTCGCCTGGCATGCATGCGGCCTGGGTTCAATCCTCAGCACCACATGCAAACAA
AGATGTTGTGTCTGCCAATAACTAAAAAAATAAAATATTAAAATTCTCTATCTCTTCTCT
CTCTCTCTAAAACTCTATATAAAAAAAGAATCTTGCTAGGAGCATTGCACACTCCTTTTT
TAAAAAAAAAATTCATCAAATATTTCTGAGTGCTTATCATGTCCCAGATAATGTAGGAAT
TTAATTAGAAAATAGAACGGACAAAGTCCTGCCTCAGAAAGCTTTTTTTTTTTTTTTTTT
TGGATACTGAAGATTGAACCCAGGGGCACTCTACCACTGAGCCACATCCCTAGCCCTTTT
TATATTTTATTTAGAGACAAGGTCTCCCTAAGTTGCTGAGGCTGGCTTTGGACTTGCAGT
CCTCCTCTTGTACCCTCCTGAGCCACTGGGATTACAGGCATGTGCCACTACACCCAGAAG
AAAGTTTATATTCTTAAACTTTTTTTGGAGGGGATTTAATTGGATTTAATTGTGGATGTG
AACATATTACATCGGGTACAAGTATGACATCTCTGGGAAAGCAGAAGTGGGACCCACATC
ACCTGCTGGGAAGCCAAGTGCTCCCAGGGAACAGGTTAATGTTGTGTGTGAAGTGTCACC
GATGTCAGGGCTGCAGGCCACAGCTAGGTGGGTAGTGTGTGGAGGAGCACAGCAGCCCCT
CCAGCTCAGCAAGGAGAGAAGAGCACTCCTCCTATTCCTATCATGCCATTCACCAAGGGC
TGGGGGAGCCTGGCCTCTTGGCAGTCATGCCCAGTCCTTGCCCCTTGCTTAGTCTGGTCA
GGGTGTGGGTGCTGCTTTTTGAGAAGGCAGTACAGCATGAGGTGGACCACATGGGTGGTC
TATCAGCACTCTTCCCCAGCATCTTTGTTAACTGCTCCAAGTCTCTCTGGACGTGCTGCT
GCAGGAATCCTTTCGGGTCACTCAATGGAGGCTTGATGATGTTTATCACAGCCTATACTT
CAGGAGCAGCTTCAGCACCACAGAGCAGATGACAGGAGTCTTATCCATGGCATCATCAAA
TGGCGAAAGAGACTTGATGTGTTTCTGGTGTCATTGGGGAGCATCTCTCATGAGCTCCTG
CACAACAAGTAGAGACAGAAGCCTATCAATCACACTCTTCTGAGAAGTATTGTTTTTTAA
GAACATAGTAGAAACCAGTTCCATGAAGAAACTATTGCACATCTGCTGGAATTGGGTGTG
TTTCCCAATGGCCACCCTGTGCTCTTGGGAAACTGTCACAGAGAACTCCTCTGGCAGGCC
AGTTAAACAGTAGGGGCAGGTCATCTGCCTAGAGATGAACCAGATCTTGATGCAAGGCAG
GCAGTACACATGGTCACAGGGCAAACACACAGGATCCTGAGCATCTCCCAGACAGAAGGG
GCATGGTCGCACTCCAAACCTGGCCAGACTTTTGCTGGCTTGCTCCTTGCACTCATAGAG
TGGTCATCACAGCTACAAAAGGCCTATGGGTCTTGAGATCAGAGTTCTCTTCATATTCTT
AACCTTTTTAAAAAAATATTTAGTTGTAAATGGATACAATACCTTTATTTTATTTTTCTG
TGATGCTGAAGATTGAACCCAATGCCTCACACAAGCATTGTATCACTGACCACAACCCCA
GCCCACATTCTTACCTTTATAAAAAATAAACCCAGCAACCTGAGGGGCTGAGGAAAAAGG
AGTGCAAGTTCAAGGCCAGCCTCAGCAATTAAATGAGACCTTCAGCTATATAGCAAAACC
TATGTCAAAGTTTAAATAAATACAAGGGCTGGGGATGTAACTCAGCAGTGAAGTGTGCCT
GGGTTTAATCCCCAATTTAAAAATATGCATTTAAAAATCGTCTATGTGTAAAATAAAAAT
TTTAAATAGTAAGCAAAGAGAACATCATAATGACTGGTAAATAGTGCAAAAGAATAAATA
TCAGTTATAATTTGAAGATCTTCAACTGCTGTTCTCAAAGATTTACTGGATGCCAAACAG
TGGACCCATAGCTTTCACAGATTCTCATTTTTTCCTCACAACATTGAGACAAGTACTGTT
GTTAAACACACAAGGCTCAGAGACTTGCCAAAAGTAAGCAAGATGTGGGCCAGGAATTAT
GCACCTAAAGCTTCTAAGCACTACACTGTATTACAGCCACAGGAGAATAAGGCTGGATAT
TTGGAAACTCAGTAGTTGGACCTTAGGTCATCGGATTGATGAGTTCTTGGCTTGAGGGCA
CATCCTAAGCTTGGGATGTATACACTGGTAAGGAAGGACTTTAAAGGTCCCTGAAGCACA
GGGGGTGAGCTTCATTGTGAAGAGATGCCAATTTCCACCTAGAAGCTTCCTTTTCTCAAT
CTGCTTGATATTGAGGCCTGGGATACTTCCAGCCTAGGAGCTCTGGAAAATCAAACCATC
AAGCTGAGCCCAGTGAGGAATGCCTGAAATCCCAGTGGCTCAGGAGGCTGAGGCTGGAGG
ATCTCAAATTCAAAGCCAGCCTCAGCAACCCATCATTATTTACAACCATAATGCACCAAT
AAAAGTATGTGAGAAGAAACAAAAATAATTCCAGTCTTAGCAATTTAGTGAGGTTCTAAG
CAATTTAGTGAGACTAAAAAAAAAAACTTTTTTTAAAAAGGGTTGAGGATATGGCTTAGT
GCTTAATTATTATATTAATAATAATAATGTATTATTATTCCCTAGAATAATAATAATAAT
AAATTTAAAAATCAAACTATCAAGATTATCTGGTCGTCTAAACCATGTTTACTGAGGGCT
TTCTCCAAGCAGGTCACTGTTGGAGGAATTAGTCGCTGGCGTTTTAGAGTAGGGTGGTGG
GCCTCAAGAAAGCAGGACACGGCTGGGGTTGTGTCTCAGTAGTAGAGCGTTCTCCAAGAA
CGTGCAAGGCCCTGGGTTCGATCCTCAGCACCACATAAAAATAATAAAATCAAGGTATTG
CGTCCAGCTAAACTAAAAAGTAAAATTTAGGGGCTAGGGATGTGGCTCAAGCAGTAGCGC
CTTTGCCTGGCATGCGTGCGGCCCGGGTTCGATCCTCAGCACCACATACAATATTAAAAA
AAATACAAAAATAAAAAGTAAAACTTAGGAAAAAAAAAAAAAAGAAAGAAAGCAGAGGGA
CAAGACTTAGAGACTTGCTGAAAGGACAATTCAATCAGTCTCTAATTCGGGTGTGACTGA
AGAATCCTAGTGGAGCTTCAACCAGAAACTCACGTTTCAAGGACTAGGAACCCTGGAGGG
AGGATACAGCTGGAGCCCAGCAGCGGCTTGGGAAGGATCACACTTCTTGGAACCAAACTT
AATGAAACCTGGCTCCCATAGAGGGTTCTCTCACTCTTTCAAACGCTTATATTTGCAATA
TTTTACAACAAGCACAGGTCAGTTTTTAAATTATATATGCACTTATACAGGTGTGTGGTC
TTGTTTGTTTTTGTTTTTTTACTACACAAAACCGAAAACAAACTCGCACCGCTCGCTGGC
GGCGCCGCCAGTTGGCCCCCCGCCTCCTCAGCAGTCTCTGGCCAGAGCTCCGCCCGCTGC
GGTCCGGAAGCTCGGCCTCCGCCGGGGTCGCGCGGAAAACTCGGAACGGAACCGCGAGTC
GAGCCGGAGCCGTGGCGCGTGCGCGAAAGGCGCAGCGGGCGCGAGCTCCCGGGCGGTCCC
CGAGGCGCGGATTGGCGCCCGCGCGCGCCCCGGAGGCCCGCGAGGTGCCCGCCCGGGTGC
GGGATGGCGGCCAGCCTGTGGATGGGAGACGTGAGTGAGGACGGCCGCCCCGGCTCCGAG
AAGGAGGAATCTCGGTGTCCCGAGGGAGGAGGATATAGGGGGAGGGGACCTCGGATCCCG
ACATGGTGGAAGTGAACGGGAGGAGGGGTCCCTTTGGTGACATAAAACCGGGTCCCAGCG
TCAGAGTGAAGCGGCTAAGTCCGGGGGGAGGCGGGGAGTGGTCCTGGGGCCCCTCCTGGG
TACCTGGAAGGGAAAGGGAGGTTCTTTGGGGGAACAGAAGGGGCGGGACCCAAGGGTTGA
AGCTTGGTTCTAGGCCTGCAGTGTTGGGGCTCCTGACTCCGCGGGCAGGTTTGAAGTGAA
GGAGTCAGGAGTTGAGAGCTACGTCTGCAGCGGAGGGCCCCGTGCCCTGCATCAGCCTGC
GGCTTGCAGGTAGGGGCCCTGTGCCCCGGGATGGGCAGCTGGACGCGGGCCTGAGCAGCG
TCGCTCTTGTTTTTATGTAG
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