SelenoDB
Release 2.0
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Transcript Report for SPT00000588_2.0
Identity
TranscriptSelenoprotein N (SelN)
SpeciesCiona savignyi (Sea Squirt)
Transcript IDSPT00000588
Transcript release2.0
External IDNone
Gene SPG00000492_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00000588_2.0 # Transcript # Selenoprotein N (SelN) # Sea Squirt (Ciona savignyi) # Full length # Reverse
CCCACGTGACCCGTGACGTCGGTAGCCATCCGTTGAGGTTTAAGATAGTTACGTCATAAT
GTAGTTTGTAACGTCTGGTGGCGAACTGAGCGAAATCCGATTAACATGATTGGGATAAAA
AGCTTAGGTATAGAAAATGTACAAAACGATGCTTAGAGCGAACCAGTCGCGTTGTTTACT
GCATTTTGAAGGAAACCGTGGTAATCCTTGGCTCCAAGGGACAACCTGGAATTAAGCAAT
GTTTTTAAATTACGGGTTACCTGTTTCACCCTTGTGGAAAATATTTATCAAATGGGAAAT
TGGCATATTATGTCGCGAACATTGTCAGGTTAATTAAGCTGTTGCAGTGTTTTGAGTATG
GATTAAAACAGTTCTATAGTTTTAGTTCGGTCAATTCTCTTATAGGCTCAGCCGACAGTA
TAATGTCAAAGAAACAAACAACTAGCCGACAATTTCCATCCGAAAACCTTTCGGCTGGGT
GTCAGACGCTCCAACCGACTGAGCTAACTGGATATACTAGTTATGTTTTGCATGTTATTT
ATGTGATGGTGGGAGAAGAAAAAACAAGTTGAGGGATTTATCCACTCTTAGCTTGGTGGG
TTAGTGCACCATCTTTTAGCTGAAGGGTTGCACGTAAGCGAAATATATGCTTCAAAACTG
GTCGCCAGCTAGTCAGTTGTGACCTTGGGCAATGAACCTTGCCTGCTATATTATATAAAC
GTCTTAATTATTCACAACCCACTACAATAGCTCCAGTAATCCAAGGGTGGGCGCAAAGGT
AATGTGAAGATTGCCCGTGTGTTATTGACCCTTGCGTTTTCCAATTTCACAGGGATAAAC
CTATCCTATCCTAGGACTGACCACTCAGGTAAAACCATTACCATTACATCATCAGATACA
ACGTACTCACCACTTATCATCGACTGGGAGTTCCCCGTTTGCTTGTGCCAACCAATCATT
GGCGTTTAGCGATGAAATCTGAGGAAATGGATAACCCGGTCAGTTGTTTGTTTGTTACTG
TTAAAGTTGGTTTGTTCTGCGATCAATGCTTTGACTGGCTTCACTTTAAATTACCCGCAC
ACTGTAATAGTTTCACCAGCTTACCAATGGACACAAAATGCCCTGCAATACTTGTGGATA
AAGTCACTTTTAGTTTTTAACCAGTGGTATCTAATGACTCTTCCAAATTGGATGTCTTTT
CTGATTATTTACACTGTAAGAGAGCCAGTAACTCCACTGGGTGCATAAAGTAGAATACTG
TGAACCTGAGCAAACCACTTTACATTGCTCCCAACCAAGTGAAGTGGTATCTATTCCGAA
TTAAAAGTCTATCTGATTATCTAAATACAGTAATGGCTCCAGCAACTTTACTCTGTGCTT
CAACACTAGCATAAACGCCGCTTATTATGGAATACACAAACCCTAGGTTCGAAATAAGAG
GTACTAGCTCCAGCAGTTCGACTGTGGACATAAAGGTTACAGTGTACCTGACTAACCCTA
TTTACATTGTAAACATGGTTTGGTTCTCTACTATTTAAACCACAAACGCCGCTGGTTATG
GAATACACAACCCCTAGGTTCAAAATAAGAGGTACTAGCTCCAGCAGTTCGACTATAGAC
ATAAAGGTTACAGAGCACCTAACTAACCCTATTTACATTGTAAACATGGTTGGGTTCTTT
ACTATTTGACCCATAAACGCTGCTGGTTATGGAATACACAACCCCTAGGTTCGAAAGTCT
ATTCTGCAAAGGCAGAATGAAGCAAATACTATATAAACATCTGCATTACCACAGTCCCAT
TTGGGCCGCAATACCATCATCTGTACTGGGAACTTGTATGCCTCCATGGAAAGCTTGGCT
TCCGTGTGGAGGGCAGACTCCTTGTCGGCGACCAACAACTCCAAGTCCTTTACCAGCGAC
CAGGTGCTGTGGTGTGCATTGTATAAATGTGGGGGTACATGCATGGTTTGCCAGTATACG
GGGAACCATGTAATTATGAAGGATTGTGAGATGTATGGACGGCGGTTATTATATCAGGCA
AGTTTACGTTCAATTTTCACCCTGAGCTTTTTCTGCGCAGTTGTGTTCTTAACGGCTATT
AGCTGGATCAAGTCAATTTAAATGCTTAAGTCATATAACTTAGCAAACAGCAATAACTCA
AGCCACTCAACTCTGGGCTAATCTAGCTACCATGCATATGCTGTTATTTTTTCCACACAT
AAAATTAAGATTCACACCACATACACCAACATAACTATTGTTGAAAGGGTTCTTTCAATG
TGTAGAAGTTGGACCGTTATAAATGTTTTATAAATTAACCAACCATCTAAATACTGTTAT
AATAACTCAAGCAAGTAGACAGTGGTTATAAGGTGTCCACCATTACCTGTATGTACAGAA
AGCCTGGCTTCCACACATGAATATAAATGAACTAACCATCTACACAATGTAATAGCTTAT
GCAACTTAAAAGTGAGCATGAGGTGTCCTATGAAACCTGTGGATAAAGCCTGGACTCCTT
CAACAGGAATACAAATGAACCAAACATTCACATACTGTAATAGCACTAGCAAATCCAGTG
GGCATAAGGTGTCCTGAAATACCTGGGGAAAAAGCCTGGCTTCGACCGACAGGGATACAA
ATGTACCAACCATCTACATACTGTAATAGCTTTAGCAACTCAGCTGTGGGCATTGTGCAC
GAAGTAACAGACGATACCCCAAAAGAGGACAAGCAATAACCAAAATACATATGAAAATAA
AAAAATACATAGTTTACCACGACGATGTACTTTTAGACCCGTGACAAAACAATCTGATGA
CCGTATTTATACGGGGTTAACGTAAATACACGAAGAGCAATTACCTGATAAAATCGTCCT
GAAGAAGTTGTAGAACGGGCGGGCTCTCGAGGGCAGTTTCCCTGAGAGTCCGCCCCGAAC
CTCAGCAGGACTGGTCGTCCAACGCTCCCCACAGCAACACCTGGTGGACGAGCTTCTTCT
CTGTCTTCGCTCGGTCAAACGCTTCGTTGAACGGAAGATAATCAACCTGGGTGAATCAAT
ATCAACTTATCTTGATGAACAATCTTGTTTTCTTGAGTTGTTGTTTATATTTTATTCACC
AGAGTTTATTCAACATTGATTATTCTCAGCCAGAAGGTTGTGGGTTTGAAACCAGCCATT
AGCTTGTCGGTTGTTTCTTTTTCTTTTAACAAGGAACTTAGTTCATGTCGTCTGGGCCCA
GTGGGTTAGTGAATTGATCAAAGAACTGCAGCAATATCTCCATCACACACAGTAATAACC
AGACAGTGGGCACGAGGTAACCCCTCAATTGCTGCTGTGTGATATCGCTGCTTGCGTTTT
CCAATTCACAAGTATAAACACGAATATTCTAACCTCCAAATTACAATGGAAAACAAAACT
TACTTGCTTGAAAGGAAAGAAAAGTTTCTCAAGTTGAGAAGCAGCGGAAGGTTCTGTGAT
GGAGTCGCTCCATTCGATTTGATCGAATTCAACTTCTATGTCCTTTCCTTTCCTGCGCAG
CTCCCTTTGTGGTTAAGTGTAAATATTATTTGATCCTGGACGCACTAGTAGACACTTTAA
TCATTTTGGTATTGTTTTAAACCCAATGATTTCTGTTTCTTAAAGACGGCTTTTACCTAA
GTATGGGTCACATTAACTTTGTTAAGTTTTGACACCACATCTACCATATACCTATATATT
TTTTCCCAATTATATACTGATGTGTTTTTATGACTGTAATCTTTTTCTTACCCTCCTATC
TTGTTAATAATGTCGAATATTCTTAACCTACATAAAGAAACTGAAAAAAAACTGGAGTAA
TTTAGATATGTTCTCATGTTAAAACAAATCTCTAGACATAGTGGTGGGGCAAATGTGGGG
AATTTTGAAGGGTCAGTTCTTGGGAGGAAATAGCTGTTAATCAACGGGCAAGAAGTAAAG
TGAGTGGGTTAGGCATTTACATCTGAAGTGCCCATCAGTCTACATTGCAACACATAATGA
TGGCAAAACTTAATAACAATAAAACCAATGTAAGTGAATTACACTGGAAAATCACCGACA
GTTGAGTTCCAGGAAGTCTGCATAATACAGGTTTAATTAATTGTATTGGTTGTCTTGTTT
TTATTGAAGATGGGAAGAAATTCAGTAAAAATGTCAAAACTTTTTTTTTGAAACATGCCA
TATAAAAATGTCACTGACAATTAAGTAACCGGAAGTCAGCAAAATGCTATTTATTTAAAG
TTTACTAATAAAGATCAGCAATCTAAATATGGTCAAAATGATAATGATACCTTCTATCAA
TGGCTGAACCATCTGAGTTGGCCAACATCAATGGACTCGATGGTGTGCGTTGGTTGATTC
TCATTAAAGGGAGATACCCTATATCGACCTCCATATGATTATCTGGAGCGTTGGGGTCTT
CCGTCTCCCATTCCATATCCACGTTCAGTTTCCTGGGGTGAAACTTATATTGTAGGGGAA
GCACCTTAATAGGGAGCATCATAGACAAAGTTAGGACTCAAGTTTAGAGTATTCAGTTCT
ATCTATAGGGTTGGAAAAAACAGAGTTGGTTTATAACATGTTATATCAGATTATATCGGT
CCAACCGTCATGTTACCAACCTATTGCAGTGTCCTATGTAATGAAACATTACTTTAGATT
CCGTAAAACCAATTGATCCACTGGGTTCACATAATGCCAACCAAGTGCCTTGCCCAAGGA
CACAACCGATAAGCTAGTGGCTGGTTTTGATCCAGCCACCTTTAGAATGCTCCGTTTAGA
ATGAGCTAACCAGTAACTACCCAGACAATATGCAAACATGTGCAAACAAACAACAACATA
TTATAATGCATTGTGCATACTGTATACCATCCATAAGCAGAATAGTATACACTATTCCAC
AACACTTACTTGGTGTTCGGGACGTAAAGTTGGAAGTCTCGCACGTGGCTTCCGTCCCTT
GCAATTGTGATGCTGCCTGCAAACTGGGCAGGTGTGAACCAGTATGGAAGGTTAGGGGGC
TCGTTAAGTTGGAACTCACTGTGAATCCTGGGGGTAATATGGGGGGTTAGGAAGCTCGTT
AAGTTGGAACTCACTGTGAATCCTGGGGGTAATATGGGGGGTTAGGGGGTTCGTTAAGCT
GGAACTCGCTGTGGATCCTGGGGGTAATATGGGGGGTTAGGGGGCTCGTTATGTTGGAAC
TCGCTGTGGAACCTGGGGGTAATATGGGGGGTTAGGGGCTCGTTAAGTTGAAACTCGCTG
TGGATCCTGGGGGTAATATGGGGGGTTAGGGGGCTCGTTGTGTTGGAACTCGCTGTGGAA
CCTGGGGGTAATATGGGGGGTTAGGGGGCTCGTTAAGTTGGAACTCGCTGTGGAACCTGG
GGGTAATATGGGGGGTTAGGGGCTCGTTAAGTTGGAACTCGCTGTGAATCCTGGGGGTAA
TATGGGGGGTTAGGGGGCTTGTTAAGTTGGAACTCGCTGTGGATCCTGGGGGGTTAGGGG
GCTCGTTAAGTTGGAACTCGCAGTGGATCCTGGGGGTAATATGGGGGGTAGGGTGGTCCA
AAAAAATTAATTTTTTGTAACTCAAACCTTAACCCTAAATTGTGTTAGAAATACTAAAAT
AATCACTCAGACCAAATTTCTTCTTTTTAAAATAATGTTTAAAGGGTGCTCAACGATATC
AAAGTTTTGTGAAATTGTGATATGTAGGTCAACTTGCACTATGCAGGAACTCATGCAATG
TACTCTAAAACCACAATATATCAATGTTGCATCATAGTAATGGCAGTTCTAACAATGCAA
GAATTCCCACAACATTAAAGCATAATGCTTTCAAGCGACTTCTAACTATTTTTCCGAAAA
CAGCAATAGGGCCAGTGACACTCTGCACGAAAGTGGAAGCAGAATTCTTAAGTAGCACAG
CGATTGGATATTGCACATTAAAATGCTGTAGATAAAAAAAAATATAAAACAAGACAGACA
AATTAAACTGTTTCAAAGACAAGAAAAAGGTTATATGATGGGCATTGACAAGAAATTACA
AAAAAATAAGTTTTTAAAACGAAGAAAGAAAGACTGTAAAAATAGGAGACCCATTGTAAG
AAGACAATCTTAGCTAAGCCTTCTACATGTACAGGGATAGATTCCAGTAATTGCAGCTTA
AATAAAACATCAAGTAGTGCTAGCAGCGAGGACTACAGTTGCTCACCAATAAAATTCCAA
TTAACAACACATATCAGCAATGAAAAACAGAAAATTATCACACTTAATCTGTCATGAGGA
CAGTGTAAAAAATGCCATGTATTCTACTAACGGCTGCCAGTAGCATGGGTCATAATATAG
GAAAGCTAGCAGCAGAAATACCCCACGTCGCACAAAAAATAGAAATACATCACACAAGAA
ATCCCAAATAGAAAAATTGTAATTGAAATAAAAACCTCATTTGACCCCAAACAAAACTAC
TGGTACATTGGGATGTAAAACAGTTATGTGGCATTTCTGAAACAAAGAAAGGGTGAAAAG
CCTACTAATTATGTTTCTGGCCAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTCCCGGGGCTAAAATGGGGGGTTTGAGGGCTTCTTAAATTGGAG
CTTCCCGTCGATCCCGGGGGTCATATGGGGGGTTAAGGGGGTTCGTTAAGTTGGAACTTA
CTGTGGATCCTGGGGGTAATATGGGGGGTTAGGGGGCTCGTTAAGTTGGAACTCACTGTG
GATCCTGGGGGTAATATGGGGGGTTAGGGGGCTCGTTTAGTTGGAACTCGCTGTGGATCC
TGGGGGTAATATGGGGGGTTAGGGGGCTCGTTAAGTTGGAACTCGCTGTGAATCCTGGGG
GTAATATGGGGGGTTAGGGGGCTCGTTAAGTTGGAACTCGCTGTGAATCCTGGGGGTAAT
ATGGGGGGTTAGGGGGCTCGTTAAGTTGGAACTCGCTGTTGATCCTGGGGTAATATGGGG
GGTTAGGGGGCTCGTTAAGTTGGAACTCGCTGTTGATCCTGGGGTAATATGGGGGGTTAG
GGCCTTAGGGGGCTCGTTAAGTTGGAACTCTTTGTGGATCCTGGGGGTAATATGTGGGTT
TAGGGGGCTCGATAAGTTGGAACTCGCTGTGAATCCTGGGGGTAATATGGGGCTCGTTAA
GTTGAAACTCGCTGTAAATCCTGGGGGTAATATGGGGGTTAGGGGGCTCGTTAAGTTGGA
ACTCGCTGTGGATCCTGGGGGTAATATGGGGGTTAGGGGGCTCGTTAAGTTGGAACTCGC
TGTGAACCCTGGGGGTAATATGGGGGGTTAGGGGGTTCGTTAAGTTGGAACTCGCTGTGA
ATCCTGGGGGTAATATGGGGGGTTCCATGACAACTGAACCCCTTACAACTGAACCCCTTA
CAACTGAACCCTTACAACTGAACCCCTTACAACTGAACCCTTTACAACTGAACCCCTACA
ATTAAGCCCCTTACAACTGAACTCCTTTTAACTGAACCCCTTTATAGCTGAACCCATTTC
AATTGAACCTCTTTACAACTGAACCATCTTTTTAGTTAAAAGGGTTCTGTTAAAAGGGGT
TCAGTTGTAGGGGCTCAGTTGTAAAGGGTTCAGTTGACTGGTCACCAATATGGGGGGTTA
GGGGGCAAAAAAGGTGTTTGCTATGGTGGAAATAAACATTGTTTTATGAAAAAAACCTGA
ATGAAATGTCAAGGTAGACACTGTTCTGTGCTCGTATAACTGCTGCTCCTCCGTGTGGTG
AGAATCGCATGGTGACGAATGGACGGGAATGGAACATGGACATCAACTTGTGAAGAAGCT
TTTCGGCTTTTGTTTTCGGCAGAGGTGACCTTAATGTATGCGTGGAGTTGTGTGTAAATA
CCACAGTATGGTGTAGCATGCAATATTGGATAGTTTATAAATCAGAGATGGGCAACATTT
ACTGTCCTCTGTCCATGGAAAAAAACAACCCAAAGTTTGTTGAAATTGGCAAAATTAAGG
CATTCTTATCAGACTTTCCACATATTTAGCTATAGCTTAAAGATTAAACCCAACTACAGT
TTTAATAGTTCATAACGAAAATACTAAATAGAGATATTGCAAGTAACTAAGGTGTATATA
CTTCTAGTACATGGTATGCTATGTAATTACCAAAATATGTTAATGAGGCAACCTTATTTC
AGGGCTGCAGAGATTTTGGTTGGCAAGCCAGATCTGGCCATATTGTCTGTGTTTGACACT
TCTGCCATATATCCTTTTAATTTCTACTACAGCAATATCTAACAAAACTTTAAAACTGCG
TTTTAGGTGTGGAAAAAAAATATTTGTGAAATTATTTCGTAGATATTTGCAATGCCTCAA
CAGTACTAGCAACATATACTACATTACATATTATGATACAATGGACATTCATTAGTTAAG
CTTTCAACATGCAAGATATCAAAATAGCAATGAAAGTGTGTGTTAAAGGCTCATGCAGAA
AAACAAACACACGGGTTGTTATGATGCACCTGTATCTATTACCAGTCAGTTCTTCAATAT
TGGTCGGTTTCTCCACCACCCAGTATGCGTCACCGATCATTTGGGATGAATTAGGGGGCA
GGAAGATTTTAAACTCCTTGGCGAAGAGTTCGATTTCAGGTTTCCTGGGTTTCTTCCAAG
CCACAAGCCCAGT
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