SelenoDB
Release 2.0
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Transcript Report for SPT00001087_2.0
Identity
TranscriptSelenoprotein J (SelJ)
SpeciesGasterosteus aculeatus (Stickleback)
Transcript IDSPT00001087
Transcript release2.0
External IDNone
Gene SPG00000991_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00001087_2.0 # Transcript # Selenoprotein J (SelJ) # Stickleback (Gasterosteus aculeatus) # Full length # Forward
ATGGCCTTGACTTTGGCAGACAGAGCGATTGGGGCCATTATCGGAGCCGCAGCAGCAGAT
GCAGCAAGTAAGATAAACCGTGTGATACTGGGGAGTTAATTAGAACATATAACATACCAA
ATCTTCTTCATACTCACACTGCCTGTTATGATGCTTTTTATAGAGCTCCTATTGTTTCGT
ATATATGTAAATATACATACAGATGTATCTATGTATCTATGTTTATTTCTTGAGTTAACA
GCGCCCTTATCTTTTACTAACAGCACTCGTTGGTGGTGTGTTTCAAATACTGTTTGGTTG
TTTCTTACGGCTCACAGAGAAGCATAAGCAACATCTGTACACACTGATAAAAAGCAGCCG
TTTCCTAACTTGTGTAAGTTATGCTGACTTCAATGTTACGAAAGGACACTTCCTGGCTCA
TAGCTGCAATGCTAAACCTTAACCAGCCAAAGTCTTAATGTAATTTGCTGTTCTTAAATA
GATTTTTAGATTTTTAGTGCTGGGATTTCATTTTTTACTTTTTGAAGCTTTTGTTGCATT
ATAAAGTATTTTGAATTCCCATCTTTCTGAAATAAACTTGCCTTGTTGTTACTACCACGT
CATTCTCAACACAATTTAATGATAAACACCAAAGGAAGTAATCCCAAATATAACTTCCTG
CTTTTGATTCAAACAACACGCATTCATTTTCCTTTCCGTGTGACGTTTGTCACCTACAGG
CGGTATCACGTTAAGAACATGCTCTAAGTATTTTTCTCTTTCTTTTGCATGTGTGCGTTG
TGACTGTGTGCTGCACACCCTTACAGCTCAGCCCATGCACTGGATCTACAATCCAGACAC
GCTCAAAGAAGTTCTCTCTGATCTGGAGCCCTGTCCCGAGTTTCGCCCGGAGTCAGCAAA
TCCTTTCTACCGCAGAGCGACGGGCGAGCAGACGTGCTACGGAGACCAGGCCTACGTCCT
GCTGGAGTCACTGAGCCGGTGTGGAGGTACAGACACGGGCAGCAGCACGACATTCTCAGG
GCCAAGCCGTCAGGATAGCATTGTTAGCTGGTCCTTAAGTCATCAGAGTTTTTAAGATTT
TGATATTGAACTAAAATGAAATGTTTTCTCAAAGATATATGTCATGTGTTGGCAGATGTT
AACGTGGAAGACTTGACCAAGCGCATCTACAAGTTCTTCGGTCCAGGAACAGTGTATGAG
CTTCCCCTCAATGATCCATACAGGGAGAAAGGAGGTACCGGGCTCGCTCTTCTCTTGTGT
AACCGTCAATAATGTGATGTCTATATGTATCCATCATCAACTTCACTGGCCTGGATGGAT
GTGAGAGCCTCTGTTACTGTCTGACAACACGCAAATAGTTACCAGCTGATGGGGAATTCC
CATCCTGAGATATTCCGTTAAATCAGTTTTTGGTGGTCAGAGCTTAGCATTTTTTCTGCT
CTTTTACAGTCGCTATATCGTATAAATACAGTGGACTTTTTGGTGCAGTAAACTGTAGAC
GGCTTTATGGCTCACAGTCATTTAAAACGAGCTGTGTCACCATCGTGGGCAGCAATAGTC
ATGACTGAGTAGACAAAGAAAAGGGCTCCACCTACAGAAAAATAAACTGCATCGACAGAA
AGTAAAAGGAAATGTTTTTGTTCCTCATCGCGCTTTTCTGATTCTTCCTAATAATGAGGG
TTATAAATAGCTGTTTTTGCATTTGTTAGGTCCTAAAGCCATCCTCCCCATAGATGGTCC
ATGGAGAAACAGCAGCCTGAAGGCTTTTATCAGAAATGTGGATGCTGGCAAAGAAGAAAC
TGGTAAGAAAAAGAAAAAAGTGTGTGTGAACCTCCCCTGGCTTCTCAACTTGTTTGGTGT
CGCTAATCTCTGTCCGTGCACTTGCTTTTTGAGGCTGTGATACGGACTGTCAGATGGACG
GCGTCACTAAGCTGGCGCCGGTGGTGGCCATGTACGCCGGGCGTCCTGAGATGCTGGAGA
AGGTGGAGAAAGCCGTGCGCGTGACCCAGAACGATGACATGTGCGTGGCTGTAACATTGG
CTGCAGCAAGGTGAGGGAAGGTTCTGAAGAAGATGAACTGTTGGTCACACACACGAGCTG
CACAGCTCAGAGTTTACCGGAGTAAAGGGAGACTCACCCGTTGTTTTTCTGTCTAACGTT
ACAAGGTTTTTGGAGCATTACATCCTCAACGGGTCCGATTCCAATGCTCTGGATGCAGTT
CTGGCTCAGTTGAATGACCCGAAGAGACAGAACCCTCAGGAGCTGGACCGTGCCGTCATT
GGTTAGTACATGTGTCCTGGTGCTTTTGGTGCTTTTCAAAGTAATAATGGTCTCAAAACG
GGCGTATTCACTTCACTGCAGAGAGTTGGACGAAAAGCAAAAAGGAAGGAGCAACAGTTA
GTTGGGCTAACGCCAAAGCTAAAAGTATATGTTTGAATTAAAGTTTTGTTTTTTTAGATC
TTATAATAATTCAGCACTGCTTGAGCAAACAAGATAAGACGGGGTAATTAGTGAGCTTTT
GTTGAACCCGCATAATTAGGACAAATGTTTCTCTCTGAAAAGCTGAGCTAATAAACCTTT
GATTCTAGCTTCACATTTTAATTGATGGATAGACGCTAGAGTGGTCTAAACCTCCTCATC
TAACACTTTGCAAGAAAACACATAAACAGGATGTTTTCAAACAACTTCCATCGCAATGAT
TTTCAGAAGAAATGGGAATAAATGTTTGATTTAGCTAAATGACTTGTTGCTCAGACATGA
GACCATAATTAGTCTTTGCACATAACTCTGCAAGCTCAGCATTAAAGGATGCTTACTTGA
GGGAGTATTTATCAGTATCAAGAAGGAACGTATGCTCGCCCCTTAAGCAGGGCGAGGGAT
CGGCAGATCAACACACAAACAAAGAGCTCTTGTGAAAAAAGTGGTCAAAACTACCAGACA
CACAGACCGTGTTGTAAAATAGGTTCCATATGTCAAATATACATATTGTGTGTTATGACA
ATAGGCAGCCGCAGCCCAAAATGGGCCCTGATGTTTGAGCACTAAACAATACAGTTTCTG
TCTCTCTCTCTCTCTCCCCGGATCTCTGCTGAAGTGCATATCCACCAGGTGAAGGACAAC
CTCGCCAAGACATCCCAGCAGCTCGTACCTGCTGTGTTCACAAACACATGAGGTAAGCCC
GGCTGGCGGCAGCAGGATCCAGGTCTGTTGACTCGGCGCGGCTTGCGTACCCTCCGCGTC
AGTGCATCCTCCAGCCTTTGATCTCCTGACTAATGGTCTCCCTTCTCCTCCCTTTTTCAT
TTTCCGCTCCCTGCTGAGTTGGATGTCTCGGGTTTTACAGGGCTAAAAGGTTGAGAAGCT
TAATGTGCATGTGCGGTTGTTCAAGCCCCGGGTCTTTTAAACATAGAAGGCCACTTTAGC
AGTAAATCAAATTGTTGCCTGGTGAAGTAACTTAGCGGCAATATAAGAATACTTGATCCT
TGATATTTGACTGCTGATCTGACCATGCACCAATCTGCAAATCTGGGTTTGCGTCCAGCT
TTGCCCGGTGCGTTCCAGGGAGCGCTCCATGGAGTCCTGAAGCTGAAGCAGCTGGATGAA
GCAGTGAGGGACACCATGCGCTGCGGGGGATGCACCGCCAGCAGAGCCTCCTTCATAGGA
GCCTGTTTTGGGGCCCAGGTACTGCAGGGGAGTGTGTGGCTCTCAGGCACATGAAATAGT
CATTAGTCACTGATACTCTAAGAAATGGGTTTCGGAAATGGGTTTTTTAAAGAGGCATCA
TTCTTTTCTTTTTTTTTAAACTTTTGCTCTATAGCTCATATTTCCAAAGAGTGATGTGAG
GAAACTGTATTTTGTTATTGAATACACACTCTGATCTGTACATGCAAAATAATGTGTGAC
AGCTTAGAGTACAACTTGGCCAAATAAATAGTCGAAAGCAAGAAAAGACATCAACCGTGT
CTGTTTGATGGTGGATTTTGTGTTGATACTGGCTTTTTGTTATATAATTGTTTGATATAT
TGTCAATATAATTGTAAACTAAAGTGACAGCGAACTCAGATATTGAGAAAGCAATGTGCT
CTCAGCTGTCATCTCGATGTGTTTTCAGAATGGTCTCCAGGGAGTCCCGGAGTCTTGGAG
GAAGAGGACGCTGAGATATCCTCTGCTGCTGCAGCTTTCTAAAAAGTTGGTCCAAAAAAA
GCTGCAATTGTAATTCAGCTTTCATTTTGCCCCAAATGCAGTTGTTTTATCTCATATCAA
GTATTTATGTGTGAGTGTGGAAAATAAAATCTGCAAGACTTTCTCAAGTTTCAGATGTAC
TTTGACAAATTGCGATCCATGACGGTCTCATTCTAAAGTCTTGTGCTGAGTGAAACTCGA
ATCCATTCGCCGTGT
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