SelenoDB
Release 2.0
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Transcript Report for SPT00001114_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesGasterosteus aculeatus (Stickleback)
Transcript IDSPT00001114
Transcript release2.0
External IDNone
Gene SPG00001018_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001114_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Stickleback (Gasterosteus aculeatus) # Full length # Reverse
TCAGCAGTAGACCGGTTCTGGGAGGCTGGAGGTCATGTAGTCCTGCTCTGTAGACGCCTC
TGCTGGCTGCCAATGACACTCGATCAGGGCATCATACAGTTCTTCACTGAGCTCCATGAA
CTTCCTGTTGGCCTCCACCACATCCAGCTCTGGACTGGGATCTGCAACACAGGCGGTTAC
TTACAAAAAGCTACACAGAACTGATAGAAATCCTAGATCCCGATTAAATGTTCAGATTCA
GGTCGGATTTAAATGACACAATAAACACCGTTGAGAACAAACATCTGAAGAGTAAAGAGA
CAAAACAAATGAAAACTGTCACAGGAGTCAATGGAAGAGGGGGAATTTGTTTACCTTCAA
GTCCGTCATCCGGAACAGCCTCACTTTCCTAGAAGAAGAAGAACACGTGTCAGAGAGTCA
CGTGTGAATGACGACGGGCTGACCGGGGTTCTAACTTACCTGTGGTGGGGGATACTGCGC
GTAATCGTACTGCTGGTAGTTGTAGCCGTACCCTCCTCCAGTCTGATCATAGCCCCAAGA
GGGGTAGTAGCCAGGATAAGCCTGCTGCTGGTACTGGTTGTACTGGTCATAGCTGGGCTT
GTATCCGGAGCTGGACTGCCACGATCTGTGCTCTGACGGCTGCGGTCGGTTCCTTAAACT
CAAGAGGTAGGGAGAGGCAGTCATTTGGCTTGTGCTCTTCAGGCCCAATTCAAAGAGTTG
AGCAGATTAACTCACTTGTTAGCAGCCAGGCTTAATCGTAGAGGTTTACCCCCCAGTCCC
ACAGCGCCCTGACAGTCCTCCAGTGCACGCTTCTGGAGGCGCTCGTCTGGGAATTGAACA
AAGCCACAGCCCCTACAGAGACATAGCATAGCTGACCTCCATTTGTATAGGATGCAGGGT
ATTATAGTCCAACCGACATTAAAAGAAAAGGCCATAGTGAGCTTGAGTAATGCAAGGATT
CTCAAGTGACCTCATGAATCTTGTCATTGGTTTTGACACTAACTGCTGCTGGGATTCATG
ACATCCACTGTGTGGCCTACTGCAGGATAGATTTTGGACCTTCTTTTTCCACCAAGAAGG
GGCTTTTTTTCGGGAGAAAGGCGGTTTATGGGTGACACCAGATTATATGGTCATAAAAAT
GGAGGCGCCCCCCCCCCCCCCCCCAATTATGTTGTAAGGCTAAATGAGCAGCACCACACA
AACCTGCACCGATGCAGGCCAACAACGTACACAAACATTTCTCCATATTGAGTGGTACGT
TCTAATACTCACTTGGAGTTCCCCATGCTGTCCAGCACCACTTTCCCACCTCTACAGGAA
GGGTAGCGGTTGTAAAAGAACTCGTAAAGCATTCCATCATCCACCTCTGGCGTTAGATCT
CCTACAAATAGAGAATACATCTGTCTACAGGAAGAAGAAAGAAAAATGTGTCAATGACAC
TACGCACTCCTGTTACAGGGCACAGCCAGTATATTACAAGTGGGTCCTCCTCATGTTTAT
GCTTCAGTGACTGAATCGGCAGCCTTCACACAAATCGTAAAACTGGGTTCATACATTTTG
ACCAGTGGATTTCCATGACCAAAAGGTTTGTGAAATCTCTGTATACAGGAGTGAGAAAAT
GTATTTAAACGAACAATGAGAATACCATCATACAGTGTTTCCCCTCAATTAGTCCAAGAA
AGTCTGTTTTTATGTTTACAATTATCCACTATGGAGGAGTATCATTTGGGGTTTTCCTGA
TGCCAGTGCTAAAACAAGACTTAAACATACGGGTGCCTAAAGAATTTACAATTCAAATTA
TGGACCATATAGAAACAGTTACACTGGCTATAACCAGAGACTACGTATGTATTACTTGGG
AATCTTTAATAGCACTAGTTGGAAAATGACGCGTCGCGTCCAGAGCCGATGGCCGGAGAG
AGAGAGCGACCCCTTCTGCTCAGCGTAGTGGGGTTCCTGTAGTAGCTTCACTAGCAGTCG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTGGTGT
AGTAGCTTCACTAGCAGCCGCCCTCTGATGGGGTTGGTGTAGTAGCTTCACTAGCAGCCG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTGGTGT
AGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTGGTGT
AGTAGCTTCGCTAGCAGCCGCCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGCCG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGCCGCCCTCTGATGGGGTTGGTGT
AGTAGCTTCGCTAGCAGCCGCCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGCCGCCCTCTGATGGGGTTGGTGT
AGTAGCTTCGCTAGCAGCCGCCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTGGTGT
AGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTCCTGTAGTAGCTTCACTAGCAGACG
CCCTCTGATGGGGTTGGTGTAGTAGCTTCGCTAGCAGTCGCCCTCTGATGGGGTTCCTCT
AGTAGCTTCGCTAGCAGCAAACATGGTGAGATTTATTTGTGCTGCGAATAGGAGAGCGTC
CTGCTTGTATTTTGAACGTCTCTTTTATAACCATATGAATTATTTCAAACGTATCTTAAA
TGAACCGCATGAACATAACAGATTTCCATTACTTTTCCAAACCTTTTGGGGTTCGACTTT
TTCCATTACTTTTCCAGGCCTGGAAATGACCATTTTAAAATGTGACTTTTCCTGGTTTTC
CATGACCAAACCCTGGGAAAACAAATATGTTAACTAAGAGTTCCACATAATGGCCAAAAT
TATCATAGATTATTTTTGATGTGGTTGTCTTTTGGCAACGCGTGACCACTGTGGGGTCAG
GTCATAATTGGCTGCTCTCCCTCTACACCAGACCAACTGCAGAAATTGCTCTCCATTAGT
CAGACTCAAAAACATGAAAGTTGGTCCTGGTTGAAAAATACAGATGCTGTCCTTTATATA
AAAAGACCTCTTGGCTCTCCATATTCACTTACCCGCTTTCCTGTTTCCCAAAGGTGGCTC
GGTTTAATTTGAATCTTGTGGGCTGTGGGAAAAACAAAAACAAATGCTATTTCTCAGGAC
AACGGGGATAATATTTTAAAAGTTACTGTCTGAACATCCATACCGGGTTGGCTCCTGGCA
AGGCTTTTCCGTTGATTTTGCGGAGACATCTTTCTGCTGTGGCCTCATCGGTCATCTCAA
CAAAACAGTAGCCCAGGGCCCCCCTGGGTGATGACAAACTGTTTAACGTCAGCATAGATC
AGGTCTAAAACAGACAATCGCTTGTGGATTTAATCCTTACCCGGTCATCTTGTTGCGTAT
GATCCGCACATTAACCACCTGCTCCCCCATGGTGGAGAAGGACCTGGTGATGAACTTCTC
ATCCATGTAGGTCTCCAGCTACAGACCACCAGATAAGAGGCGGCTTAAGAAGCATTCAGC
GATGGTTCCCATTCATACATTCAGTTGTCAGACACTGTGGGACACCCTGAATACTGTTAA
CGCTGATTTTAATTCTGTATTCGGCAAGTGTAAAAACTGAACACGGCGGCTCATCGTTGT
CCACTATCCAGATATCTATATGAAAAGCAGAGTTCTCAAAGCTAAAAATGGGTTCAAAGT
AGGACTGGGCAGTAGCATATTCCAAGTGAACACATTCTTTCATGGACCCCGAAAAGGACC
GCTGGCCGGCGAGGTCAGCCGGTTAGCCGCTATGTGGCCACCAGAGGGAATACCAGCGGC
TCGACCAGTAAAGCCTTCTCTGATTGGACTTACGAAGGACTTTTCCAAACCACAAACCCT
CCAAACAGACGCAGCTCCTCCGTTGGGCACACGTTGTGATGGTGCTGTACCCAGCATGCA
GTTCGGCGGGGGCATTTTATAAATATGCAACTAATGGTGTTAAACATTGTTTATGTGTCG
CAAACGTTTGTGTCGTGGTGTTTTATCCTGTTAAAGAGCCTTTGTTGTGGGTTAATAACT
GTTGTAAAATGTTATAAACACACAACACAAGTAGCTCAGAGTGGGCAGAGACACATTCAG
ACTTATCCTGGTTCGGCCCCACATAGACACAGAGTCCTGGTTCGGCCCCTCATGAACACA
GAGTCCTGGTTCGGCCCCTCATAAACACAGAGTCCTGGTTCGGCCCCTCATGAACACAGA
GTCCTGGTTCGGCCCCTCATAGACACAGAGTCCTGGTTCGGCCCCACATAGACACAGAGT
CCTGGTTCGGCCCCTCATAAACACAGAGTCCTGGTTCGGCCCCTCGTAGACACAGAGTCC
TGGTTCGGCCCCTCATAAACACAGAGTCCTGGTTCGGCCCCTCATAAACACAGAGTCCTG
GTTTGGCCCCTCATAAACACAGAGTCCTGGTTCGGCCCCTCATAAACACAGAGTCCTGGT
TCGGCCCCTCATAAACACAGAGTCCTGGTTTGGCCCCACATAGACACAGAGTCCTGGTTC
GGCCCCTCATAAACACAGAGTCCTGGTTTGGCCCCACATAGACACAGAGTCCTGGTTCGG
CCCCTCATAAACACAGAGTCCTGGTTCGGCCCCACATAAACACAGAGTCCTGGTTCGGCC
CCACATAAACACAGAGTCCTGGTTCGGCCCCTCATAGACACAGAGTCCTGGTTCGGCCCC
TCATGAACCGGATCGCCGTACGGTTTACATTGCAGTGTGCCGGTTAACCTACAGTGAACA
CCGAACAGGACTAACTACTAATATTACAGCGCCGCTTTCAGCGTTCGGAGTTTTGAATCC
GAACCGATTTCCACAACGCATGAGGCGCAAGTCGCGGCGGCGTCAGCCAACACGTTGTTG
GCAGGATTCGTCCATTGAACGTTGTTCAGTACTCACGTTCCCCATCCATAGCGTACTCAT
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