SelenoDB
Release 2.0
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Transcript Report for SPT00001196_2.0
Identity
TranscriptSelenoprotein O (SelO)
SpeciesIctidomys tridecemlineatus (Squirrel)
Transcript IDSPT00001196
Transcript release2.0
External IDNone
Gene SPG00001100_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001196_2.0 # Transcript # Selenoprotein O (SelO) # Squirrel (Ictidomys tridecemlineatus) # Full length # Forward
AGACAGGCCGATGGCCGCAAAGTCTTGCGGTCGAGCATCCGGGAATTTCTCTGCAGTGAG
GCCATGTTCCACCTGGGGGTTCCCACCACACGGGCTGGGGCCTGCGTCACATCTGAGTCC
ACGGTGGTTCGTGACGTGTTCTATGATGGTAATCCAAAACACGAAAAGTGCACAGTTGTG
TTGCGAATGGCTCCCACCTTTATCAGGTAATGCTGGTCCTCCGGGCCTGCCTGCACGCCT
GCTTGTAGAGTTACTGCGCTTGTGCAGCCGGAAGGTCGCGCAGAACAGAGGAGCCAGCAG
ACTGGTATTCCATGCCCCAGGAAAGACTCAGTGCAGGAGGTTGGTTGTCCCATCCTGGTA
GACAGTGGGGCTGGCTGGACAGAGGGACCCCACAGGACCATGCCTGGGAGGAGGGGCTGT
CCAAAAGGAGATTCCTAGGAGTGTAAGACAAGGAACTACCTAAAATTGGCCAAGGAAATG
GGCTCAGTGTCATATAAACAAACAGGCTGATAAAAAGCAGGTGTGCTGTAGTCCTTGTGG
TCATCCTTACCTGTCCAGACGCAGTCCAGCTGCTGGGTGACCGGAGTCCTTTCTGGTGCT
TTCCTACCCCAGGCCCTGGGCCACACAGTCCTCGATGCTCCCTGCTCTCAGGCCCTCTCA
GGACAGCTGAGAACAACATGTAAACATCTGTATTTATTGAAAACAATAACGAGTTCACCA
CAGTCTCTCAAGTGCTGAGGAAGGTTGTTTTGCTTGGTACTGAGGATTGATTAAGCCCAA
AGGCACTCAACCACTGAGCCACATCCCCAGCCCCTTTTTTTATATTTTATTTAGAAACAG
GGTCTCATTAAGTTGCTTAGGGCCTTATTCCTGCAAGCCACTGGGGTTACAGCCGTGCGC
CAGCGCATCTGGCTGGTTTTCCCATACGTGTAAAGCTGTTTCTGACCATGAGGAACCTCA
GCATTATCCTCATCTCATCTCTGCCATCACCTCGCTGCCTGACTTCTGGCACCTTCAGAA
CTGGTTCCCTGAACCAAGAGCTGGGCTCACCTTGTGGTTCTCCCATTCTGCCAGGTCCCC
AACAGCCACCAGCTGCTCATGCCTGAGATAGACTGTGAGCGTCTCTGGCCTTTCTGACCA
GAGGGGGAGTGGGAGGAACCAGGGCCCAGGTCTGCCTTGTGGTGGCTCTGATGATGCCTG
CTGGAGGCTGTTTTGTCTCTGCAATACCCGCAGCCTCTCGGCCTCGGCCCACTAGTTGCC
AGAAGCAATCCCAGTATGACAGCAACCGCCTGCAGCCTAGAACCCACCCTGTCCTCCCTG
CCAGGATGCTGGAGTAGGGCAGAAGAAGCTGTGGCCATCTCTGGGCTGCCAGAGTAGGAG
CTGTCTGCCTGAAAATGAGCCAGGATCCAGGTGCACCTGGGCCTTCAGAGCTGGTGGCCT
GCTGCCTGACCAGGGTGCTTTCCTGCAGGGCCTCAGCTGGCTTCTTTTTTATTTTTCTTA
CAAGGTGCTGGGGTCTCTGAATTGTCAAACACCTGGGTCTTCCCTCCAGGTTTGGATCCT
TTGAGATTTTTAAGCCTGCTGATGAGCATACGGGCCGTGCAGGTCCCAGCGTGGGGCGGA
ATGACATCAGAGTCCAGATGCTTGACTATGTGATTGGCTCTTTCTACCCTGAAATCCAGG
CTGCCCACGCCCACTGCAGCGACCATGTGCAGAGGAACGTGGCCTTCTTCCGAGAGGTAG
GTGGAGGCCAAGCACCCACGGGCCCCTATGCCCAGGAACTTGAGGCCTGTTTCAGTCAGT
TTTTTTGCTGTTGTGACCAAAAGACCTGATTTTAGAGAAGGAAAAGTCTGGGAGCTCATG
ATTTCCGAGGTCTCAGTCTAAGTCAGCAGGCTCCACTCCTCAGGGCCCCAGGTGAGGCAG
AAAGAACATCATGGCAGGAGGGTGTGACGAGGGAGGAGCTCAGGACATGGCACCAGGAAG
CAGAGAGCGGGAGAGCTCAAGACAGACACCCCCAAGGCACACCCCAGTGACCCCTCCTCC
AGCCACACCCTGTGCCTTCAATCACCACCAGCTCGTTCCCACAGGCCATCAGTGCACTGT
GCCAGGGCCCTCCCAACCCAGGTACTTCGCGGTAAGCCTTCCTGCAGTGTCTGCACATAA
ACTTTTGGAGGACACTCCCATCTAAACCATAGCAGGGCCCCACCCACTGCTGAACACAGT
CATTTCAGCCATGGACAAAGCTTTTGCCCAGGTGCCATCCTCTCCTGCAGCCTTGTGGCT
TGGGCATCTGGCAAGCACACTAGTCAGGCTGTGAGCACTGCTGGGGCCCGGGGCACTGTG
GTACTTGAGTGTCCTTGAGGGGTCTGTGTGCTGGGTATATCTGCAGGAGCCAGCAAGGCC
CTGGCCTGGGGAGAGCGTTGGAGGGGAGGACTGGCCTGTTGTCATCTGGGGGAGACAGGG
ATTGCCCAAGTTGGGTCTGGGCCCTGCCAGGTTTCTTTTCTCGTGACTAAAAGGCTCAGG
GGTCACTCTAGTTAAACTGGGCTGCACGAAATAACCACACAAGAGACACAAATACCTTTT
TCTTTGGGGTTGCTGTGACAGCTCCTCTGACCTTAAGGGTCCACAGAAAGAGAGCGCAAG
AGCAGGCACTGACCCCTTTTATTGAGGAGAAGCTATTCAAATGAGACAAGGGGTCAGGTT
TCAGGGGGCTGAGTCTATCTTCATGATGTCCACTGTCAGCAGGTTGACTGACACCTGGGT
AGGCCATACCCAAGGGCATAGTAAGAGAAGGGGACACACACAAGGCACTTCCATGGAAGA
TTCTATCCTAAACAGGGCAAGGGGTTAGATTACAAAGGAACAGGTGAGCATAGCTTCACC
CGTGGAGCTGTAGCAAGACACATCCATTTCTGTGACTGAGCACCTCAGCACCCAGCTGGG
GAGTGTAACTCAGTTACCCATAAGGTTGGCCTCCCACAGGGCCCCTGCCCCTGCCACAGA
CAGCACACTCGTCAGGTTATCACCTGGTCTGGCCCACAGCCTGCAGCCTCAGTGGGCAGA
GGGAAAGAGGAAGGTCCAGGCCAGGTAAGGTATGCAGGGGTCGTCTCCAAGGGCCAGACC
ACCATGGAGCCACTGCAGCCAGGGCAGGTTCAGGCCCATCTGCCCAGTGGCTTGGGCTGG
GCCACCACAGGTCAGCAGCAGTGGCTCTAAGCAGGTGTCGGTGGGCCCATTACACAACAG
GTCCCTCCTCTGGCCGGCTCAGCCACATGGCACAGGTGTGGGTAGGTGGTCTGGTCAGCT
TGCTCCATCCCTCTGAGCTTTGGTCTGACAGTGAAGCTGAAAGGACAGTGCTGCCCAGTT
CTCGGGAGCATCTGTGCTCTGACATGAAACAAGACACATGCAGGACCCTGCTGGGCAAGG
GCATGGTAGAGTGAGGGCCCTGGAGGCAGCCCGCATCCTGAGACTCCTGTTCTCCAGCAG
CACATGTGGCGGGAGTGCTGGGTGAGCAGCAGGGCTGGTGGGCACACCCCACCATGTGGC
ACCCAGTGTGGATAGGCAGCAGCTTGCAGGGCACCTCAGCCTGGACCCAGCACATTGTGC
CAGGTGGCATGTTCCTTACTGGTACCCATGGGGCCTTTATTTATTTATGAGAGAGAACTT
TTTAATATTTATTTTTCAGTTTTCGGTGGACACAACATCTTTATTTTTTAATTTTTATGT
GGTGCTGAGGATCGAACCCAGCGCTCCACACATGCCAGGCGAGCATGTTACCGCTTGAGC
CACATCCCCAGCCCCCCATGGGGCCTTTATAATGGGCCCAAGTCTGCCCAACCAAATCGG
TTGCCTGATTTTTCTGGTTTGGTTAAAAACCAAAATGGTGAGCATATGAGGAACGGAAGG
TGGTGTAAGTGGCAGCTGAGGCCCCACGTGCCAGCTTACCCAGACACACCTCTCCTGGAA
CACTGAGCAGGGACTACAGGGGCCCTGGGTAGAGAGCAGGAATCACTCAGAACACTGCTG
GCTTTGGGGGGGTGGGGCAGGACCAGGGAGGGGGCTGCCAGCACCTGTCCTTCCCCAGGT
GATACGACGCACAGCCCGCATGGTGGCCGAGTGGCAGTGTGTGGGCTTCTGCCATGGCGT
GCTCAACACTGACAACATGAGCATCGTGGGGCTTACCATCGACTATGGGCCTTTTGGCTT
CCTGGACAGGTGAGCCGTCCCTTGGGCTGTAAGTGGTGAGCTATAGGCAGCCTGCTGCCC
ACCTAGGAACTAACCCCTGAGGTGCAGGCCCCAGCCGCAGTCACAGGGTGAGGGAAGGCA
GGGAGCATCTGACCTGGGGCGTGGGGATTGTGTGCACAAGTCTTTTTTCAGTGTTTAATT
CTTAACGTCTGACTGGCCATTCCTGGAAGCAGGAATCTCCCGGAGGGTTTTGAGCAAAAG
CAGTGTGAGCTGTCTGTGCATTTTAGAAAGGTTCCCTCCCCCGTGGGGTTGGGCACAGGT
GGTGGGCAGGATGTCAGGGCTGTCTGGCCCCTGGCGGGCTGAGGAGAGCCCAGCTCTCCT
GCACTTGAGGTGTAGGTAGAAGAACCAGAGCCATCCAGGGTCAGGGCAGGACAGGGTGGT
GGCCACACAGGGCCTGCCCTCTGGGTGTGTCCTTCACAGCACCACAGTCTGGCCTGTGTG
GCAGGTATGACCCTGACCACGTGTGCAATGCTTCGGACGACGCCGGGCGCTACTCGTACA
GCAGGCAGCCCGAGGTGTGCAAGTGGAACCTGCGGAAGCTGGCGGAGGCACTGGTGCCCG
AGCTGCCCCACGAACTAGCTGAAGCCGCCCTAGAGGAGGAGTTTGACTCTGAGTTCCAAA
GGCACTACCTGCAGAAGATGCGCCGTAAGCTCGGCCTCGTACATGTGGCACAGGACGGGG
ATGGAGCACTGGTGGCCAGGCTCCTGGAGACCATGCACCAGACTGGTGAGTGGGCACACG
TTGCAGCCAGTTCTGGCATTATTACTGTGGGCAAATTCGCAATTTTCTCTTTTCACCTTT
TTTTTTGTGGGGGGCAGGTACTGGGGACTGAACCCAGTGGTGCTTTACCACTGAGCTGCA
CCCCGAGTCCTTTTAGAGACAATGTCTTGTTAAGTTGCTGAGGCCTTGGACTTACGATCA
TTCTGCCTCAGCAGCTGGGCTTGCAGGCCTGGCCCCTATTGACCATTTTAGAAATACATA
CTCAGTGGCTTTGAGCACGTCTGAATGCCAGGCAGCCACCACCACCATCCTGAACCCAAA
CTTGGCCTCCTTGAAACTCCAACCCTTACAGCCCTCACAGCCCTGACACCCACCATTCCA
CTTTCCAAGTGTGACCATGACTGGCTCTTGTAGCATATGTCCAGACCTTATTATCATTAT
TATTACTTTTGGTACTGGGGATTGAACTTGGGGACACTCGACCACTGAGCCCCATCCTCA
GCCCTATTTTGTATTGAGACAAGGTTCCAGTAAGCTGTGCAGATGGTGTTACAGGTGTGG
CCACTGTGCCTGGCAGAACCTCCTGTCTGAAGGGGAGCTCCACCTCAGCCCCTGCAGGCC
CCATTCCACACCGGGCACTTCACAAATGAGAGTGGGCAGTGTCCTCCATGAATTCCCCCT
TCACTCCCCACCAGTGACACACACTTGCACATTTGATGCATCCCCTCCTCTTGTCTGATT
TTTTTTTTTCGGGGGGGGGGGGGAGGTACTGGGGATTAAACTCAGACACTCGCCCACTGA
GCCACATCCCAGCCCTGTTTTGTATTTTATTTAGAGACAGGGTCTCACTGAGTTGCTTAG
TGCCTCACCATTGCTGAGCTGCTCGGATTACAAACGTGCGCCCAGCCAATTTTGTTGATC
TTTTACTACAAGAACCAACTCCTGCTTTCATTGTCTATTACTTTTCCCACTGTTCATTTC
CCCTCTGATCCTTATAACCAGATTTCTTTCACTTTTGCTAATTTTGGTCTTATGTTCCAG
GTCAGACTGGGCACCTTAGCAAGACTGTCTCAGAATTAAAAATAATCTTAAAAAGGTCTG
TGGATGTAGCTTAATGGTAGAGCACCCCTGGGTTCAATCTCTGGTACCACCAAAAATTAT
GATTCCCTTTTCCTTCCTGTTAATGAAACTAACAGGACAGAGCACTGAAGTGGTATCTAG
CTTCATCCCATTGTGGCCTAGACAGTGCCCGCGGCAGAAGCCCCTGTGCACTTCAGAGCT
AGGGTATTCCCTGCTCTTGCCCAGATGGTCTGCGCATTACTGAGTGCCATATTCTTAGAA
GCCAGCACCTTCTGTGGAACTGCTGTTTCTCCTCCAGCTTCGCTAACTACGTGCTTGGTC
ACTTCCACATCTTCCTGATGTGGTGGCTGTGCTGTCTGTTACAGTTTGGGCCTGGCCTGT
TTTGTCTGACTTCAGAGTGGCCTCAGCCCCTTGGGTCACATTGCTTAGGAGTCTCATCTT
GTCTCAGGCCAGCCCCTATGGACAGCATGTGGTCACCTGTCTCTGGATCCATGATGCAGA
CATGGTTACCAAGGGAAGCACTTGGGCTGTTCTGCTCTGTTTTCTGTATGTCTTGAACTT
TGTCCCTCATTCTCCATGACTGCTCTTGTTGACCACCTCCCTGCCCATCCCCGCCCGAGC
ATGCTACTTTGGTCCCTTGTTTTCTTTAGTTTCCTTCTTAGGGGATGCCATGGTTCCTGT
GCCCAGCCTTGACACACAAGGCTGAGGGTGGCAATGGCTCCCGTTGCAGGCAGGGACAGC
TGTGTCTGTTATCTGTTTCGGGGACAACCTACAGAATCACAGGAAACCATAGCAGATGAG
TGGTAGCTGAGGGGTCAGGGCCCAGCACACACTGGAGAGGGGACATGGGTTGGCCTCGAG
GGAGTGTGGGGCTGGCGTCTACCAGCCTCCACCTGAGCAGCTTGTGTACAGGTGCCGACT
TCACAAACACCTTCTCCTTGCTGAGCTCCTTCCCCATCGAGCCACAGTCACCTGGCTTGG
CTGAATTCCTGACCACCCTGACCTCGCAGTGCGCCTCCCTGGAGGAGCTGAGGCTTGCCT
TCCGGCCCCAGATGGATCCCCGGTGGGTACTTTCTACCATGGGGTTTGCTTTCAGAAGGG
GACGGGCATTCAGAAACAAAGATCTTGGGGATGGCTGGAGACGGCTAGTCCTAGGGGACC
CACACAAGCCTTCTCCTGGGAATGGGGGCAGTTAGGTCCCAACTGTGACTTGGGCCTGTT
GGTCAGAGGAAAGCCCAGGGATACGGATGTGGGTGGGGCACAGGTTGGATGGGGATAGTG
GGCATCCAGGCAGCTGTGGTATACCTGGCAAGAGCCTGCAGCACTCAGATCCCAGGCAGA
CCACACCTCAAGATGCTGCTCAGACTCGGGATGAGACCCCGGCAGTGCTGGTGGTGGCTT
CTGAATAAGAACCACAGGCCGGTCACACAGAAAGGAGTTTAGTGGGGAGTGACAGGCATT
ATGCTCTGGGGCTGGTGATTATCCAGGAGGACACGCTTTGTTAGCATGTGAGCTGACACC
CCAAGCAGCAGACCTGCAGCTGGTGCCCACCTGGGGCAAAGGATAGCGGCCCTGGCTGCA
GGCTCATGCCTCCTCCCCCAGGCAGCTCTCCATGATGCTCATGCTGGCGCAGTCGAACCC
ACAGCTCTTCGCACTCATTGGCACCCAGGCAAACCTGGCAAGGGAGCTGGACCGTGTGGA
GCAGCAGTCACGGCTGGAGCAGTTGAGCCCCGAGGAGCTGCAGAGCAGGAACAGGGGCCG
TTGGGCTGACTGGCTGCAAGAATACCGGTGAGCCCCGAACGCAGGGTTGCAGGGTGCCTG
CTGCTCTGTGCCGCGGCCACGGCTCAGGTGGTTGCAGATGATCCTGCATGGGCGCCCTGT
GGCTGCTCCTGCTGAAAGAGCAGCTGGGCTGTGATTCCAGAGTCCGGCTGGAGAGGGACA
TGGAGGGTGCCGGCGATGTGGCGGCCTGGCAGGCAGAGCGAGTGCGCGTGATGAAGGCCA
ACAACCCCAAGTACGTCCTGAGGAACTACATCGCACAGAGCGCCATCGAGGCCGCCGAGA
AGGGGGACTTCTCAGAGGCAAGCATGCCCCTGTCCTCACTCTGTCCCTGGGAGGGTGGGC
TGGCCAGCATCCCTCACCTGGACTCTCCCTCCAGGTACGGCGGGTGCTGAAGCTGCTGGA
ATCTCCTTACCACAGCGATGGGGAAGCGGCTGGAGGCTCTGAGGCTGCGGAGGCAGTCCC
TGGGGGACAGTCCTATAGCAGCAAGCCCCCACTCTGGGCAGCAGAGCTGTGTGTGACATG
ATCCTCGTAGTGCCTCGGCCTCTCCTGAGGCGCTCAGTGCTGCTGAACTGCCGAGATGTG
CCAGGCTGCCCCTAGCTTCTCTCCATGATGGCAGAGGCCTCCAGTCAGACCCTGACCAGT
CTCTGTTGGAAGCCAGCTCAGCAGCACT
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