SelenoDB
Release 2.0
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Transcript Report for SPT00001196_2.0
Identity
TranscriptSelenoprotein O (SelO)
SpeciesIctidomys tridecemlineatus (Squirrel)
Transcript IDSPT00001196
Transcript release2.0
External IDNone
Gene SPG00001100_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001196_2.0 # Transcript # Selenoprotein O (SelO) # Squirrel (Ictidomys tridecemlineatus) # Full length # Reverse
AGTGCTGCTGAGCTGGCTTCCAACAGAGACTGGTCAGGGTCTGACTGGAGGCCTCTGCCA
TCATGGAGAGAAGCTAGGGGCAGCCTGGCACATCTCGGCAGTTCAGCAGCACTGAGCGCC
TCAGGAGAGGCCGAGGCACTACGAGGATCATGTCACACACAGCTCTGCTGCCCAGAGTGG
GGGCTTGCTGCTATAGGACTGTCCCCCAGGGACTGCCTCCGCAGCCTCAGAGCCTCCAGC
CGCTTCCCCATCGCTGTGGTAAGGAGATTCCAGCAGCTTCAGCACCCGCCGTACCTGGAG
GGAGAGTCCAGGTGAGGGATGCTGGCCAGCCCACCCTCCCAGGGACAGAGTGAGGACAGG
GGCATGCTTGCCTCTGAGAAGTCCCCCTTCTCGGCGGCCTCGATGGCGCTCTGTGCGATG
TAGTTCCTCAGGACGTACTTGGGGTTGTTGGCCTTCATCACGCGCACTCGCTCTGCCTGC
CAGGCCGCCACATCGCCGGCACCCTCCATGTCCCTCTCCAGCCGGACTCTGGAATCACAG
CCCAGCTGCTCTTTCAGCAGGAGCAGCCACAGGGCGCCCATGCAGGATCATCTGCAACCA
CCTGAGCCGTGGCCGCGGCACAGAGCAGCAGGCACCCTGCAACCCTGCGTTCGGGGCTCA
CCGGTATTCTTGCAGCCAGTCAGCCCAACGGCCCCTGTTCCTGCTCTGCAGCTCCTCGGG
GCTCAACTGCTCCAGCCGTGACTGCTGCTCCACACGGTCCAGCTCCCTTGCCAGGTTTGC
CTGGGTGCCAATGAGTGCGAAGAGCTGTGGGTTCGACTGCGCCAGCATGAGCATCATGGA
GAGCTGCCTGGGGGAGGAGGCATGAGCCTGCAGCCAGGGCCGCTATCCTTTGCCCCAGGT
GGGCACCAGCTGCAGGTCTGCTGCTTGGGGTGTCAGCTCACATGCTAACAAAGCGTGTCC
TCCTGGATAATCACCAGCCCCAGAGCATAATGCCTGTCACTCCCCACTAAACTCCTTTCT
GTGTGACCGGCCTGTGGTTCTTATTCAGAAGCCACCACCAGCACTGCCGGGGTCTCATCC
CGAGTCTGAGCAGCATCTTGAGGTGTGGTCTGCCTGGGATCTGAGTGCTGCAGGCTCTTG
CCAGGTATACCACAGCTGCCTGGATGCCCACTATCCCCATCCAACCTGTGCCCCACCCAC
ATCCGTATCCCTGGGCTTTCCTCTGACCAACAGGCCCAAGTCACAGTTGGGACCTAACTG
CCCCCATTCCCAGGAGAAGGCTTGTGTGGGTCCCCTAGGACTAGCCGTCTCCAGCCATCC
CCAAGATCTTTGTTTCTGAATGCCCGTCCCCTTCTGAAAGCAAACCCCATGGTAGAAAGT
ACCCACCGGGGATCCATCTGGGGCCGGAAGGCAAGCCTCAGCTCCTCCAGGGAGGCGCAC
TGCGAGGTCAGGGTGGTCAGGAATTCAGCCAAGCCAGGTGACTGTGGCTCGATGGGGAAG
GAGCTCAGCAAGGAGAAGGTGTTTGTGAAGTCGGCACCTGTACACAAGCTGCTCAGGTGG
AGGCTGGTAGACGCCAGCCCCACACTCCCTCGAGGCCAACCCATGTCCCCTCTCCAGTGT
GTGCTGGGCCCTGACCCCTCAGCTACCACTCATCTGCTATGGTTTCCTGTGATTCTGTAG
GTTGTCCCCGAAACAGATAACAGACACAGCTGTCCCTGCCTGCAACGGGAGCCATTGCCA
CCCTCAGCCTTGTGTGTCAAGGCTGGGCACAGGAACCATGGCATCCCCTAAGAAGGAAAC
TAAAGAAAACAAGGGACCAAAGTAGCATGCTCGGGCGGGGATGGGCAGGGAGGTGGTCAA
CAAGAGCAGTCATGGAGAATGAGGGACAAAGTTCAAGACATACAGAAAACAGAGCAGAAC
AGCCCAAGTGCTTCCCTTGGTAACCATGTCTGCATCATGGATCCAGAGACAGGTGACCAC
ATGCTGTCCATAGGGGCTGGCCTGAGACAAGATGAGACTCCTAAGCAATGTGACCCAAGG
GGCTGAGGCCACTCTGAAGTCAGACAAAACAGGCCAGGCCCAAACTGTAACAGACAGCAC
AGCCACCACATCAGGAAGATGTGGAAGTGACCAAGCACGTAGTTAGCGAAGCTGGAGGAG
AAACAGCAGTTCCACAGAAGGTGCTGGCTTCTAAGAATATGGCACTCAGTAATGCGCAGA
CCATCTGGGCAAGAGCAGGGAATACCCTAGCTCTGAAGTGCACAGGGGCTTCTGCCGCGG
GCACTGTCTAGGCCACAATGGGATGAAGCTAGATACCACTTCAGTGCTCTGTCCTGTTAG
TTTCATTAACAGGAAGGAAAAGGGAATCATAATTTTTGGTGGTACCAGAGATTGAACCCA
GGGGTGCTCTACCATTAAGCTACATCCACAGACCTTTTTAAGATTATTTTTAATTCTGAG
ACAGTCTTGCTAAGGTGCCCAGTCTGACCTGGAACATAAGACCAAAATTAGCAAAAGTGA
AAGAAATCTGGTTATAAGGATCAGAGGGGAAATGAACAGTGGGAAAAGTAATAGACAATG
AAAGCAGGAGTTGGTTCTTGTAGTAAAAGATCAACAAAATTGGCTGGGCGCACGTTTGTA
ATCCGAGCAGCTCAGCAATGGTGAGGCACTAAGCAACTCAGTGAGACCCTGTCTCTAAAT
AAAATACAAAACAGGGCTGGGATGTGGCTCAGTGGGCGAGTGTCTGAGTTTAATCCCCAG
TACCTCCCCCCCCCCCCCGAAAAAAAAAAATCAGACAAGAGGAGGGGATGCATCAAATGT
GCAAGTGTGTGTCACTGGTGGGGAGTGAAGGGGGAATTCATGGAGGACACTGCCCACTCT
CATTTGTGAAGTGCCCGGTGTGGAATGGGGCCTGCAGGGGCTGAGGTGGAGCTCCCCTTC
AGACAGGAGGTTCTGCCAGGCACAGTGGCCACACCTGTAACACCATCTGCACAGCTTACT
GGAACCTTGTCTCAATACAAAATAGGGCTGAGGATGGGGCTCAGTGGTCGAGTGTCCCCA
AGTTCAATCCCCAGTACCAAAAGTAATAATAATGATAATAAGGTCTGGACATATGCTACA
AGAGCCAGTCATGGTCACACTTGGAAAGTGGAATGGTGGGTGTCAGGGCTGTGAGGGCTG
TAAGGGTTGGAGTTTCAAGGAGGCCAAGTTTGGGTTCAGGATGGTGGTGGTGGCTGCCTG
GCATTCAGACGTGCTCAAAGCCACTGAGTATGTATTTCTAAAATGGTCAATAGGGGCCAG
GCCTGCAAGCCCAGCTGCTGAGGCAGAATGATCGTAAGTCCAAGGCCTCAGCAACTTAAC
AAGACATTGTCTCTAAAAGGACTCGGGGTGCAGCTCAGTGGTAAAGCACCACTGGGTTCA
GTCCCCAGTACCTGCCCCCCACAAAAAAAAAGGTGAAAAGAGAAAATTGCGAATTTGCCC
ACAGTAATAATGCCAGAACTGGCTGCAACGTGTGCCCACTCACCAGTCTGGTGCATGGTC
TCCAGGAGCCTGGCCACCAGTGCTCCATCCCCGTCCTGTGCCACATGTACGAGGCCGAGC
TTACGGCGCATCTTCTGCAGGTAGTGCCTTTGGAACTCAGAGTCAAACTCCTCCTCTAGG
GCGGCTTCAGCTAGTTCGTGGGGCAGCTCGGGCACCAGTGCCTCCGCCAGCTTCCGCAGG
TTCCACTTGCACACCTCGGGCTGCCTGCTGTACGAGTAGCGCCCGGCGTCGTCCGAAGCA
TTGCACACGTGGTCAGGGTCATACCTGCCACACAGGCCAGACTGTGGTGCTGTGAAGGAC
ACACCCAGAGGGCAGGCCCTGTGTGGCCACCACCCTGTCCTGCCCTGACCCTGGATGGCT
CTGGTTCTTCTACCTACACCTCAAGTGCAGGAGAGCTGGGCTCTCCTCAGCCCGCCAGGG
GCCAGACAGCCCTGACATCCTGCCCACCACCTGTGCCCAACCCCACGGGGGAGGGAACCT
TTCTAAAATGCACAGACAGCTCACACTGCTTTTGCTCAAAACCCTCCGGGAGATTCCTGC
TTCCAGGAATGGCCAGTCAGACGTTAAGAATTAAACACTGAAAAAAGACTTGTGCACACA
ATCCCCACGCCCCAGGTCAGATGCTCCCTGCCTTCCCTCACCCTGTGACTGCGGCTGGGG
CCTGCACCTCAGGGGTTAGTTCCTAGGTGGGCAGCAGGCTGCCTATAGCTCACCACTTAC
AGCCCAAGGGACGGCTCACCTGTCCAGGAAGCCAAAAGGCCCATAGTCGATGGTAAGCCC
CACGATGCTCATGTTGTCAGTGTTGAGCACGCCATGGCAGAAGCCCACACACTGCCACTC
GGCCACCATGCGGGCTGTGCGTCGTATCACCTGGGGAAGGACAGGTGCTGGCAGCCCCCT
CCCTGGTCCTGCCCCACCCCCCCAAAGCCAGCAGTGTTCTGAGTGATTCCTGCTCTCTAC
CCAGGGCCCCTGTAGTCCCTGCTCAGTGTTCCAGGAGAGGTGTGTCTGGGTAAGCTGGCA
CGTGGGGCCTCAGCTGCCACTTACACCACCTTCCGTTCCTCATATGCTCACCATTTTGGT
TTTTAACCAAACCAGAAAAATCAGGCAACCGATTTGGTTGGGCAGACTTGGGCCCATTAT
AAAGGCCCCATGGGGGGCTGGGGATGTGGCTCAAGCGGTAACATGCTCGCCTGGCATGTG
TGGAGCGCTGGGTTCGATCCTCAGCACCACATAAAAATTAAAAAATAAAGATGTTGTGTC
CACCGAAAACTGAAAAATAAATATTAAAAAGTTCTCTCTCATAAATAAATAAAGGCCCCA
TGGGTACCAGTAAGGAACATGCCACCTGGCACAATGTGCTGGGTCCAGGCTGAGGTGCCC
TGCAAGCTGCTGCCTATCCACACTGGGTGCCACATGGTGGGGTGTGCCCACCAGCCCTGC
TGCTCACCCAGCACTCCCGCCACATGTGCTGCTGGAGAACAGGAGTCTCAGGATGCGGGC
TGCCTCCAGGGCCCTCACTCTACCATGCCCTTGCCCAGCAGGGTCCTGCATGTGTCTTGT
TTCATGTCAGAGCACAGATGCTCCCGAGAACTGGGCAGCACTGTCCTTTCAGCTTCACTG
TCAGACCAAAGCTCAGAGGGATGGAGCAAGCTGACCAGACCACCTACCCACACCTGTGCC
ATGTGGCTGAGCCGGCCAGAGGAGGGACCTGTTGTGTAATGGGCCCACCGACACCTGCTT
AGAGCCACTGCTGCTGACCTGTGGTGGCCCAGCCCAAGCCACTGGGCAGATGGGCCTGAA
CCTGCCCTGGCTGCAGTGGCTCCATGGTGGTCTGGCCCTTGGAGACGACCCCTGCATACC
TTACCTGGCCTGGACCTTCCTCTTTCCCTCTGCCCACTGAGGCTGCAGGCTGTGGGCCAG
ACCAGGTGATAACCTGACGAGTGTGCTGTCTGTGGCAGGGGCAGGGGCCCTGTGGGAGGC
CAACCTTATGGGTAACTGAGTTACACTCCCCAGCTGGGTGCTGAGGTGCTCAGTCACAGA
AATGGATGTGTCTTGCTACAGCTCCACGGGTGAAGCTATGCTCACCTGTTCCTTTGTAAT
CTAACCCCTTGCCCTGTTTAGGATAGAATCTTCCATGGAAGTGCCTTGTGTGTGTCCCCT
TCTCTTACTATGCCCTTGGGTATGGCCTACCCAGGTGTCAGTCAACCTGCTGACAGTGGA
CATCATGAAGATAGACTCAGCCCCCTGAAACCTGACCCCTTGTCTCATTTGAATAGCTTC
TCCTCAATAAAAGGGGTCAGTGCCTGCTCTTGCGCTCTCTTTCTGTGGACCCTTAAGGTC
AGAGGAGCTGTCACAGCAACCCCAAAGAAAAAGGTATTTGTGTCTCTTGTGTGGTTATTT
CGTGCAGCCCAGTTTAACTAGAGTGACCCCTGAGCCTTTTAGTCACGAGAAAAGAAACCT
GGCAGGGCCCAGACCCAACTTGGGCAATCCCTGTCTCCCCCAGATGACAACAGGCCAGTC
CTCCCCTCCAACGCTCTCCCCAGGCCAGGGCCTTGCTGGCTCCTGCAGATATACCCAGCA
CACAGACCCCTCAAGGACACTCAAGTACCACAGTGCCCCGGGCCCCAGCAGTGCTCACAG
CCTGACTAGTGTGCTTGCCAGATGCCCAAGCCACAAGGCTGCAGGAGAGGATGGCACCTG
GGCAAAAGCTTTGTCCATGGCTGAAATGACTGTGTTCAGCAGTGGGTGGGGCCCTGCTAT
GGTTTAGATGGGAGTGTCCTCCAAAAGTTTATGTGCAGACACTGCAGGAAGGCTTACCGC
GAAGTACCTGGGTTGGGAGGGCCCTGGCACAGTGCACTGATGGCCTGTGGGAACGAGCTG
GTGGTGATTGAAGGCACAGGGTGTGGCTGGAGGAGGGGTCACTGGGGTGTGCCTTGGGGG
TGTCTGTCTTGAGCTCTCCCGCTCTCTGCTTCCTGGTGCCATGTCCTGAGCTCCTCCCTC
GTCACACCCTCCTGCCATGATGTTCTTTCTGCCTCACCTGGGGCCCTGAGGAGTGGAGCC
TGCTGACTTAGACTGAGACCTCGGAAATCATGAGCTCCCAGACTTTTCCTTCTCTAAAAT
CAGGTCTTTTGGTCACAACAGCAAAAAAACTGACTGAAACAGGCCTCAAGTTCCTGGGCA
TAGGGGCCCGTGGGTGCTTGGCCTCCACCTACCTCTCGGAAGAAGGCCACGTTCCTCTGC
ACATGGTCGCTGCAGTGGGCGTGGGCAGCCTGGATTTCAGGGTAGAAAGAGCCAATCACA
TAGTCAAGCATCTGGACTCTGATGTCATTCCGCCCCACGCTGGGACCTGCACGGCCCGTA
TGCTCATCAGCAGGCTTAAAAATCTCAAAGGATCCAAACCTGGAGGGAAGACCCAGGTGT
TTGACAATTCAGAGACCCCAGCACCTTGTAAGAAAAATAAAAAAGAAGCCAGCTGAGGCC
CTGCAGGAAAGCACCCTGGTCAGGCAGCAGGCCACCAGCTCTGAAGGCCCAGGTGCACCT
GGATCCTGGCTCATTTTCAGGCAGACAGCTCCTACTCTGGCAGCCCAGAGATGGCCACAG
CTTCTTCTGCCCTACTCCAGCATCCTGGCAGGGAGGACAGGGTGGGTTCTAGGCTGCAGG
CGGTTGCTGTCATACTGGGATTGCTTCTGGCAACTAGTGGGCCGAGGCCGAGAGGCTGCG
GGTATTGCAGAGACAAAACAGCCTCCAGCAGGCATCATCAGAGCCACCACAAGGCAGACC
TGGGCCCTGGTTCCTCCCACTCCCCCTCTGGTCAGAAAGGCCAGAGACGCTCACAGTCTA
TCTCAGGCATGAGCAGCTGGTGGCTGTTGGGGACCTGGCAGAATGGGAGAACCACAAGGT
GAGCCCAGCTCTTGGTTCAGGGAACCAGTTCTGAAGGTGCCAGAAGTCAGGCAGCGAGGT
GATGGCAGAGATGAGATGAGGATAATGCTGAGGTTCCTCATGGTCAGAAACAGCTTTACA
CGTATGGGAAAACCAGCCAGATGCGCTGGCGCACGGCTGTAACCCCAGTGGCTTGCAGGA
ATAAGGCCCTAAGCAACTTAATGAGACCCTGTTTCTAAATAAAATATAAAAAAAGGGGCT
GGGGATGTGGCTCAGTGGTTGAGTGCCTTTGGGCTTAATCAATCCTCAGTACCAAGCAAA
ACAACCTTCCTCAGCACTTGAGAGACTGTGGTGAACTCGTTATTGTTTTCAATAAATACA
GATGTTTACATGTTGTTCTCAGCTGTCCTGAGAGGGCCTGAGAGCAGGGAGCATCGAGGA
CTGTGTGGCCCAGGGCCTGGGGTAGGAAAGCACCAGAAAGGACTCCGGTCACCCAGCAGC
TGGACTGCGTCTGGACAGGTAAGGATGACCACAAGGACTACAGCACACCTGCTTTTTATC
AGCCTGTTTGTTTATATGACACTGAGCCCATTTCCTTGGCCAATTTTAGGTAGTTCCTTG
TCTTACACTCCTAGGAATCTCCTTTTGGACAGCCCCTCCTCCCAGGCATGGTCCTGTGGG
GTCCCTCTGTCCAGCCAGCCCCACTGTCTACCAGGATGGGACAACCAACCTCCTGCACTG
AGTCTTTCCTGGGGCATGGAATACCAGTCTGCTGGCTCCTCTGTTCTGCGCGACCTTCCG
GCTGCACAAGCGCAGTAACTCTACAAGCAGGCGTGCAGGCAGGCCCGGAGGACCAGCATT
ACCTGATAAAGGTGGGAGCCATTCGCAACACAACTGTGCACTTTTCGTGTTTTGGATTAC
CATCATAGAACACGTCACGAACCACCGTGGACTCAGATGTGACGCAGGCCCCAGCCCGTG
TGGTGGGAACCCCCAGGTGGAACATGGCCTCACTGCAGAGAAATTCCCGGATGCTCGACC
GCAAGACTTTGCGGCCATCGGCCTGTCT
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