SelenoDB
Release 2.0
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Transcript Report for SPT00001968_2.0
Identity
TranscriptSelenocysteine synthase (SecS)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00001968
Transcript release2.0
External IDNone
Gene SPG00001874_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001968_2.0 # Transcript # Selenocysteine synthase (SecS) # Medaka (Oryzias latipes) # Full length # Forward
ATGAACAGTGAAAACTTCCTCCTGAGTGAGAAAATAGTGTCGCCCTCCTATGTTCGGCAG
GGGTCACAGGCCCGACGTGGCCATGAGCAACTCATCAGACAATTATTGGAACAGGTAAGG
AGCGTTTCTCCTCATTGGGGTTTTTTTTCCCCCCCGCAGGTGTTGCCATATCTTCATTCA
CATTTTGCTTGTTTTAGGGTAAATGCCCCGAAGAGGGATGGAGCGAAAGCACAGTAGAGC
TTTTCCTGAACGAGCTGGCCGTGATGGACAGCAACAACTTCCTGGGGAACTGTGGCGTAG
GCGAGAGAGAGGGCAGGGTGGCGTCCGGCCTCGTGGCACGCCGACATTACAGGTGCAAGC
ATGTCAGGCGGAAAACAGTGTGTAAAAAAGAAAGCAACAGTCACCTACAATTTTTCTATA
CATTCAAATTCTTATGTATCCTAGTATAGAGCTTTGTGGAATCCCATTAGGTAAACACCT
TTAAAGTCCTGTTCCCAGAGGTCTTTTAATCATAAATTTGCAGTTTTTAGTCTAAATAAA
AAAAAGCCTGTGTCACTTTCTAGGACATAGTTTCTGCAGAGCTGCAATAGTTCATCAGAA
ATTCGCCTCTGAGTTGTAGGTTGGCTGCACGGTTGCGCAGTGGTTAGCACTCTTGCCTCA
CAGCAAGAAGGCCCCCAGAACATCAATGGGGGACCTTTCTGTGTGGAGTTTGCACGTTTT
CCCCGTGCATGCGTGGGTTTTCTCCGGCATCTCTGGCTTCCTCCCACCGTCCAAAACATG
CTTCATAGGTTGATTGGCAACTCTAAATTGTCCCTAGGTGTGAGTGTGAGAGTGGATGGA
TGTGTGATTGAGGACATTCTACCCTGCGACAGACTGGCGACCTGTCCAGGCTGTCCCCTG
CCTTCGTCCATAAGTAGCTGGGATAAGCCCCGTGACCCTGAAAGGGATAAAACGGAATAG
AAAATGAATGAAAAAATGAATTGGAGTAATATGACATTTAGTTAGATATATATGTAAATT
TCAGTTGTATAAACAACTATTGAGTTGGATAAACATAAGAAATTACGTTGAATACATTTA
ACTCAATTACTTGTCACCAATTGAATCAATTCATTTAAATTTTATAAGTTGTATATATAT
GCATCACAATGTAATTGGAAATAAGATCATAAACTTGTGCGTTTACTTTGTCTGTTATTT
TTCTCCAAGCAAAAATCTCTTTCTTTTTGATGATGCAGCCGTATTACTTTTTTGATGGGC
TTGTAATCTTCAAATGCCCTCATTAAAATCTGCAACTCCGTCTCACTGAAGTATAACGCT
CTCTTTTTTTATCCATGCATTTCCATGGTGACTCCGGAAATGTGCGATCCATTGAGAATG
TCTTTGTGTACTTGCTGTTCACGTGCATTAACCCAGGGTCGAGCGTAATTATGCTAACTC
ATATCCGGATTTTGGAACCGACATACCCAGAGTAAGCAAGTTCTGGGTTAAAGTCAGGGT
AGTTTAAACGTGCTTTCTGGAATACCCCCTGGCTCTCTGCTTTATGTTAGGAATGTCTTT
TTATTTTTGGTATTTTCCATGCATGTCCCAACTGCCGAACAAGGCAAATGAACGGTATAG
ACGTTTTGGAAGGTTGATCTTCTCCTCTCCCACAAAGGTTAATCCATGGCATTGGTCGTT
CAGGAGACATTGCTGCTATTCAGCCTAAGGCTGCGGGCTCCAGCCTGCTCAACAAACTCA
CCAATTCTGTTGTGCTTGACATCTTAAAGCTTTCAGGTTTGTGAATTTTTTTTTCCCCTT
CGGTTTTAAAAAACGCTTTTTTTCTTGTATGTTTTGGTACATTTCTGCCAGAGAAACATT
TGTTGTGTTCTTGTAGAATTAGTGATAAAACTTTCATAATTTAACTACAGAGATCGTCAA
CACAATTCTGTATGCATTAAATCTGCTGATGACACCTTTTCGATCAATGTATGAATCACA
CTTGAGGCTGCTGAAGAAATTAAAACGATATTATTGTTTTAAATAGTAAAAAACTGATAT
TTACAGAAAAAATATACATTTATTTTTTTAAACTGAACTTTATTTTTGAACCCTTACTTG
TTTTAAAGGGTTGAATAATGTTATTTTTTAACATCATACAACTCCTAAAGCTATATTAAT
TTGTAATATCTTTTTAATCTTATAATAGTTGAAGAAGGTTTTCAAATAGTTATTGTAAAC
AAAAGCAAAGTGAGGTGACATCCAATCTTCCACCATTCTAAGAAGAAACATGTATCACTT
AATTACTTTTCTTTTTTTATGGGGGAATATCCTAAACTATGTTTTTTTTCATGTAGGTTT
GGGTTTTAAAAAAAATCTGGTAATCTATTCATTTAAACCTTCACGTAGAAATTTCAAGAT
TAACAAATAAATTGATGGATTCTGCTTCAAAGTAGTTTCTAGTTTAATGCTAGTTGTAGT
TTCATTAAAATACTGCTTTACTTTTTAGGTTTTAGTTTTTGAATTTGTCGTTTTTTTAAA
TAAAAATGGCACCTTTCCTCTTTTTTCTGCTTTTATTGTGAAAACTTGACAGTTTTCCAT
CTGTCCAGTATTTTTTTTACTATTAAACTCCAACATTTGAGCCTCACTGCAAGTTAGGAT
ACAAGTTTGCAGAGTAAACATTGGAAGAGAATTATTAAAATAGTAAAAAAAAAAAGTGGT
TATGATGTAAATGAGTAAAATTCTGTTGTTTTATCATTATAGTTATCTCAAAGTTTGAAA
GTTTTACCTTTAGTTTCTTTGTGATTTAGGTGTCCGGAGTGTGGCAAGTTGCTTTGTTGT
TCCCATGGCAACAGGGATGAGCTTGGCTCTTTGCTTCCTCACCCTTCGTCACAGGAGACC
CAAAGCACGCTACATCATTTGGCCTCGCATCGACCAGAAGTCCTGTTTCAAGTCGATGAT
CACGGCAGGTGAAGATGATTCCCGTCTGGATTCGTAAATGAATCCTTCCAAGCAGAAATG
AACCGATTGACCTGAATCTTTTTGCGGCGCCGGTATGTTTCCACCTCATAGAATCCCACC
CCCTGTCTTATCAGGCTTTGAACCCGTCGTCGTGGAGAATGTCCTCGATGGCGACGAATT
GCGAACAGACTTGGAGGCGGTGGAGCGGAAAGTGGAAGAGCTCGGCGCCGAGAACATTCT
GTGTGTTCACTCCACAACGTCTTGTTTTGCACCGCGAGTCCCTGACAGGTGATAAGGGGG
TCTGGTGTGTCTTTATTGGCATCTGTTTCTCCTTGAAACGCATCAATGAGGCCCGATTTG
AACCTCTCGTTTGCCTAACTGTCATGTAGCCTGGAAGAGCTGGCTGCTATGTGTGCCAAA
CACAACATTCCTCACGTCGTCAACAATGCATACGGAGTGCAGTCGTCCAAATGCATGCAT
CTGATACAACAGGTATTTACTACTCCTCCANNNNNNNNNNGTTTGCGTCATGAACAAAGT
CTAGATTTTACTAAAAGATTATACCTTAATAAGTTCACAGCGCCACCTACAGACTTAGAG
AAGAGAGGTTTGTAATTTGGCACGTAAAAGAGTGAAGGAACCAATAAGATGCAGATGCAA
CACATGCTGTAAGGACTTCCCACTAAAGGAAGAAACAGGAATTTTATTTGTAAGGATTTT
TCTAGCAGTGACTGTTTACATGCAGGATAATATGCATATCTATTCTAAAAAAGCGATCCC
ATGTTAACGCATTTTTCTGATTAGTTCGGCTGGATTATATTATACTCTGCATAGAATGTG
TTGGATTTGGCTATATTATTGACATGATAGAATCACTTTGTTTTATGTTTATGACAGAAA
ACATGGTAGTACAAATCTGATGGTTTGATTCTCTTTTTTTCCCACCTGACAAAGTTTGTT
GAACAAAAATCAGTATTTTTTTTGTTTGTTTTGCTCTTAAATTAATCTCTCAATCTCTCA
TCTTTTGATCTATTTTTAAGGCTTTCCCAGTGGTCTTTTAGTGACGATGAAGCCATGTTC
AGCCTAAATAATATAAAAAACCTGTGTCGTTCTGTAGGACATGGTTTCTGCAGTAGTTCA
TCAGAAATTCCCCTCTTGGGTTGTGAATGTGAAGGAAGCCTTCCCTGACTTCCAGTCATC
CCATTGTTTACACTCTCTCCCACTAGCTTACAGCCCATCACACCCTAACATTAGCGGTTC
AACAAAAATAGTGAGCAATATTGGACCTATGCAGCCGTACAGTTTTGAGCGAGATGTCAG
CTCAGATGAGGGAAACTCAGACGTCCTTTTTGTTTTTTCTGCAAGTGGATGCATCAGATG
GAGGTGGAGCGGGGAGCTTTTGGCCCGCTGACTGTAGCAGCTACGTCACAACTACAACTT
TTTCCAACAGCCTTTTTTCTTCTGATTCACAATAATTGGAAAATAAAGCAATACGGAGAA
ATGGAATTTTAAGATGAATGTTCTTTATACTTATGGTCCTCAATCATGAGTAAAAATCAA
CAAGAACATGTTAAAAAAAAAACACATTTCATTGGAATGGATCTAAATATTTTAGGCTTT
TTATAAATCAAAGGGTGGACCCTTCCCCTTCTGTGTGAGAATTATTGATTACAAATACTG
CGTTATGTTGATTTTTGGTGTTGCATCCTATTGACTGTACTTGTTGCTGCAGTTTATTTC
AATATTTTATTCAAAATGTTACGTAAATGTAGCCTTGATAACTTGATGGTACCTGGTGGA
TCCTTTTAATCCCTCCACTTCTAAGGCTTTTTTAATTCATATTTCTCCTTAAAAGTTTTT
CTTCATGGCTTACTGGGCCCCAGTGTTGTTAATAATCACTGCAGATATCAAAATAAAAGC
ATGTAGCGCAGGTCTGTGTATCCTTTCCTCTCACACGATCCTCAAACATGGTCCACAAAT
CGATTTATTTAAAGACTCAACCAACTTTGTCGATACAGTCCAATTCTTTTACCTAAATGG
ATGCAGTCTATATATTTATTCATTTGGCATTTAAAATTATAAACATCTTTTAACAGCAAA
ACTATTGTTTTTTTTAGTGGCACTTTTTATTTTTAAGCAACAGAAACAAAATGTCTTTGA
CACAACAGCTTTAAACATGAAAACCTGACATTTTGGGTCCTTTCAGACGTTTTTTTTTCT
TTTCTTTTTTTATTCAGTTATGGTTTGCAGTGGTGTAAAGAAAACAAAGGCTTATCATAT
GTTTAGTGAAGACAACACACATCCCTAAAAAATGGTTGACCTTCAGCCCATTGGAATTGA
TAAAAGCAAGCTTGTGATTGGACGTTGTTTGCATCACATGTACATAAAAAGGCAGACAGT
AGAGACACAACAGGAAGAGAAACCGATACCAGAAATAGATCATTTACTTCCTGATCGATT
TTATATATTTTTTTACCAGCATAATTTCATTCATGTGTGGATTCTGCTGTTTTTCTTACT
GATTTTTTTGATGTATCTGTATATTTTACATCCCTAATGTAGAGGTATTACGATGAAATC
TAAAAGGCCCAATAGTTGTTTATTTGTTTGTGTAAATGTTGAATCACCTTCTTGTTTCAG
CTGAACTACAGTGTCTTTCTCCGTCCAGGTCGAGCCTCCGCTTCACCTTCACTGGACGTC
CTCATCACCCTCCTCACCACGGGAGCAAACGGCTACAAGAAGTATCTGTCAGAGAGGAAG
GTGAGGAATGGGGGGCAGATGCACAGATCAGCTCTCACAGGCTAAAAATAACTCGTCCTA
AACTCAAGCTGGGTGTGTAGACGTGCAGAAAACATGGATGAATCGATCAGTTCACTCCTG
TTTGTGTGCTCTTTGCTGTGACTCCAAAGTGAATTTTGCAAAATGAAGGGTGGGGTGGGG
GGCACTCTAGAAGTTTTTTAAACACCTCCCCTGGTGGTTCCTTGCTGTAAATTGCAGATT
TTCTGCCGATGCAGCATTTTCCTCTGCAGCAAACCTCCACTGCTGTAGCGTCGACGTCCT
GTATCACAACTTTATCCGCTTCTCTAGAAGAAAAAGAAAAAGCACAAACCCAGATTTTCC
ATCGACGACGTGTTTTTAGTGAAACACAGTAAAAATGAAACTGACTCTACACCTACTAAA
GATCTGTCAAAAAAGAAAAACACCTGAGAAGCCATTAATTACCCACAATACTTTTAGTGT
AAAGCCCCTCTCTGCAGGAGGAATTTCACCTGGCCTTTTTTTTATGACCTGACATCATAA
AGCCCTATTGATTTCCTTTGGTCCACTATATGCATAATTAATGTTCAGAATCTGTTTTTC
CATCGCGTCTGCAGATCCACGCGGGTTGTTCACATCTCTCCTGAGGTCACCAGCTGTAAA
TAATTTAGACGTCGACCACGGAGGCTCCTTTGCAAAAGTGAATGCTGTGTTCTATGGCCT
GCAGGTGCTCCCCGCCCTTGCCCCAACCCATTACCCCCCTTTTACCTGCCCCCACTGACT
GAGCAGTTGATATATGCCCTTCACTTTCACCCTCCACCCTCCACCCCTGCCACCCTGGTC
ACAACTGCAAATTCATGAAAAACCTCTTTTTTTTTTGTAAATGGCAGTTCTTTTATCTGT
TTTATCTCCATAGCAACTATTTAATGTTTTTGTTATCTGGGGGTGATAAACATGTTCGCG
TAAATTTTAGAAGATTTGGCAAAAGTAAACTTTTGGATTTCCTTGGCAACGGATGTTTTT
TGTTCACCACAGCCACCTTCCTTTTATGTTTATATGATATGTCATGTTGTTTTGTTCAGT
TTGAGCCGAAGATTCACGCACTATACTTTTGCAATAAAAAATGTGCCAACAACAGAGGAA
CGCCACTTTTGCGAGCTCGCCACTCTAACACGGTTAAGTCTGCAACTTCTAATATCAACA
ATTTTTCCTAAGTAGCTTTCCAATGACGCTCGGGGAGTTGGGAGGCGATGGATTGATCCC
TTGGAAAAGTTTAAATTTGTTTTGTTTTTTTTACTCAAGATGGCAGCCTCCTTCAGAGAT
CAAAGGTCAATAAAAACTTCAGTAGATGTTGTTGAGTTAAGCTGGCGGCACGTGTGTGAA
ATTCATGAAGATTCCTCGAACTAAAGTTGACTTTTCTCATATGAAAATGTGAAAATCCCA
GAATTTCACACTTTGCCATAAAATGGCCGCCAAGCCGTAGGTTCTGTGGCCATCCCATAA
TAATTATAAAACTTCTCTCGGATGCCCTCGACATGTCTGTTTGGGTTAGTGGATCTTGAA
ATGCGTTTGAGCCCCATAAGAGATTTTGGCCCAATTCATGGTTTGTTTGTTTTTTTTAGG
CGGTTGCGCCCGCTGTGATGTCATCATATCTTTTTTTTTGTGTGTGTGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTCCTTTTCTTCGG
GTATTAAGTGCGTGCAAACTTTGGTAAGTTTTTGAGTATGTGGCAAGGGAAACATGCAGT
CAGAAAGAAAAATTGCAAAAACGAGCTGTCCTGGACCGCGGCAGGACATTAAAAAAGTCT
GTTGTTGATCATATTTACAAAAACAAACAATAGCTGATGAGAATGTGTTTGCACACACAC
ACACACACACACACACACACACACACACACACACAAAGGCTTTGTCTGCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAGTC
AGCAGAGTCTGCCGACACACTCCTTCTTTTGCAGAGTGCAGGAACCTCTAATGTGTGATG
CCTCACAGGGGGAATCTGAACCAGAAAAACACTAAAAGCCATCGTTTTGGTTGGGTTACA
GCTTCCCCGCTCAGCCACACAGAACATCTCGCGTCTTGTCGTTCTGATTCCGTCGGTCAC
ACACGGCTGGAGGTTTTGGGCTAAGCATCTCGTCAGCGTCTTTTAAAGCCGTTCAGTTCC
CCGTTAGAAAGCGTGCATAATGCTCTGCTTCTCTAATTGATCTCAGAGGTAGCCGTCCTC
AGAAATTCTGGGGAAGGGAAGTGGTAGTACAGGAAGTAGGAAAAGAAACAAAACGCCACC
GTCAGGCAGGTGGAGTATTTGTTGGGTTTGCAGTAAAAACCCGACTGCTAAGAGTCTTGC
AGTGTTGTCTTGTGGCCTCTACCTCTGTCTTTGTATTTTCTCACGAACGTTTGCATGATC
TACAGGAGATCTACTCCATTCTGGCTGAGGAATTGAAAAGACTGGCGTCTGCACACGGGG
AAAGATTGCTGCACACGCCTCATAACCCCATTTCTCTGGGTGAGCTTAATGAGTTATTAC
TGACCAGAAGGTCAACTTTACTTTTTTCTTTTTTCTTTAACCCAGTCTTTGCACCTGTGT
GTCCCTCCTCCAGCAATGTCTCTAGATGGCCTTCAAGCCACCAGCGACAAAGCAGTGACT
CAGCTGGGCTCCATGCTGTTTACCCGACAAGTTTCTGGAGCCAGGTATGCAGGGTCACCT
TAAATGAAGACGGCCAGGGGACGCTGGTAATCAGGCAAATGGATGAGAGGGAAACTACTT
AAGAATATTAGGCGGCCTGTTCTGTCAGGGAAACTAATTTAAGAGCATGTTTTCCTTTTG
GAAGTAAAGTATCTTTTACTCGTGACCCTTATAGACCCATTCCAATAAAAATGGTGTTTT
TGGTGATTTTAACATGTTCTTGTGGAACTAATTTTTGATGATGGAGGACATATGTTAAGA
AAATTAAGCCCAAATTTGCATTTTTTTTAAATTCAAATCGTGAATTAGGAGTGAACAAAA
AAGAAAAAATGCTGTTTGAAAAAGATTGTAGTTGTGACGTAGAAAGTTTGCTAGAGTATG
ATAGGTTCCCTCCTCCAACTAGACACATGTACATCTTGGTTGTCCTCATCCCAGCTGACA
TCTGACTCAAAACTGAACAGCTGGATAGCTCCAAAATTGCTGGCCATTTGTGTTTTAAGT
TGAGGATATGAGGGACTGTAAGCTAGTGGTAAAGCGTGGAAACAGAGAGCTCTCAGCTTA
GAGGAGAGGAAGGGGGCGGGGTTGATTTCCCTCAAGGGTCCCTTCGACAACTTATAAGAG
AATTTCGAATGAACTCCTGTCACTCTGCAGAAACTATTCTCTAGAAAATGACAGTTTTTT
TATTTTAATTTTAAAAACAGCATAAATATAATTCAACAACCATAGGGAATGCTTTTAAAA
TAGATCAAAATACGATTGGAGCGCAGATAAAATTCTGTAACAGATAAGTAATCGGGGATA
CAGGGAGGACTTGGTGTGTCATTCGATTTTTGAAAGCAGATAAGGAGACTTGTTGGTGGA
ACCAAGGAGTACATGGGTGTGAAAGACACAGGAGACAGAGCTGAGGAGGTTTCAGAGTCA
CAAGGATGGGTCCATGATGAATCCATCAGAGGAACAGCTCATGTTAGATGTTGTAGAGAT
GAATTCAGATGGTTTGGACTTGTTGAAACCTACCAGGAAAGAGGTCTAGATGAAGACCAA
AGAGGAGGTTTTTAAGTATTAAAAGACCACCGGGAACACTTTCAAAATGTATCAGAAGAT
GACTGTAGTGGGTCTTTAACCATTTTCATTCATATTTACTGCTGACTTGATACATTTCCT
GATTCTCTTCACCTAATTTGTGTTTTATCCCTGGTTTCTGTTTTAAATAAACTGCAGCAC
TACTTTCTTGTCCCCCCCCCTCCCCTCCATTTTTTAGGGTCATACCACTTGGTAAGGAGC
AGACCATAAATGGATATACATTTCGTGGGTTTATGTCGCACTCCGAGTCCTACCCCTGCC
CCTACCTCAACGCGGCCTCGGCCATCGGCATCACTCGGGAAGATGTGGCGCTGTGCATCA
AAAGGCTGGATAAAAGCCTGAAGGCTCTGAAGAAGGAGGGA
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