SelenoDB
Release 2.0
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Transcript Report for SPT00001968_2.0
Identity
TranscriptSelenocysteine synthase (SecS)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00001968
Transcript release2.0
External IDNone
Gene SPG00001874_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001968_2.0 # Transcript # Selenocysteine synthase (SecS) # Medaka (Oryzias latipes) # Full length # Reverse
TCCCTCCTTCTTCAGAGCCTTCAGGCTTTTATCCAGCCTTTTGATGCACAGCGCCACATC
TTCCCGAGTGATGCCGATGGCCGAGGCCGCGTTGAGGTAGGGGCAGGGGTAGGACTCGGA
GTGCGACATAAACCCACGAAATGTATATCCATTTATGGTCTGCTCCTTACCAAGTGGTAT
GACCCTAAAAAATGGAGGGGAGGGGGGGGGACAAGAAAGTAGTGCTGCAGTTTATTTAAA
ACAGAAACCAGGGATAAAACACAAATTAGGTGAAGAGAATCAGGAAATGTATCAAGTCAG
CAGTAAATATGAATGAAAATGGTTAAAGACCCACTACAGTCATCTTCTGATACATTTTGA
AAGTGTTCCCGGTGGTCTTTTAATACTTAAAAACCTCCTCTTTGGTCTTCATCTAGACCT
CTTTCCTGGTAGGTTTCAACAAGTCCAAACCATCTGAATTCATCTCTACAACATCTAACA
TGAGCTGTTCCTCTGATGGATTCATCATGGACCCATCCTTGTGACTCTGAAACCTCCTCA
GCTCTGTCTCCTGTGTCTTTCACACCCATGTACTCCTTGGTTCCACCAACAAGTCTCCTT
ATCTGCTTTCAAAAATCGAATGACACACCAAGTCCTCCCTGTATCCCCGATTACTTATCT
GTTACAGAATTTTATCTGCGCTCCAATCGTATTTTGATCTATTTTAAAAGCATTCCCTAT
GGTTGTTGAATTATATTTATGCTGTTTTTAAAATTAAAATAAAAAAACTGTCATTTTCTA
GAGAATAGTTTCTGCAGAGTGACAGGAGTTCATTCGAAATTCTCTTATAAGTTGTCGAAG
GGACCCTTGAGGGAAATCAACCCCGCCCCCTTCCTCTCCTCTAAGCTGAGAGCTCTCTGT
TTCCACGCTTTACCACTAGCTTACAGTCCCTCATATCCTCAACTTAAAACACAAATGGCC
AGCAATTTTGGAGCTATCCAGCTGTTCAGTTTTGAGTCAGATGTCAGCTGGGATGAGGAC
AACCAAGATGTACATGTGTCTAGTTGGAGGAGGGAACCTATCATACTCTAGCAAACTTTC
TACGTCACAACTACAATCTTTTTCAAACAGCATTTTTTCTTTTTTGTTCACTCCTAATTC
ACGATTTGAATTTAAAAAAAATGCAAATTTGGGCTTAATTTTCTTAACATATGTCCTCCA
TCATCAAAAATTAGTTCCACAAGAACATGTTAAAATCACCAAAAACACCATTTTTATTGG
AATGGGTCTATAAGGGTCACGAGTAAAAGATACTTTACTTCCAAAAGGAAAACATGCTCT
TAAATTAGTTTCCCTGACAGAACAGGCCGCCTAATATTCTTAAGTAGTTTCCCTCTCATC
CATTTGCCTGATTACCAGCGTCCCCTGGCCGTCTTCATTTAAGGTGACCCTGCATACCTG
GCTCCAGAAACTTGTCGGGTAAACAGCATGGAGCCCAGCTGAGTCACTGCTTTGTCGCTG
GTGGCTTGAAGGCCATCTAGAGACATTGCTGGAGGAGGGACACACAGGTGCAAAGACTGG
GTTAAAGAAAAAAGAAAAAAGTAAAGTTGACCTTCTGGTCAGTAATAACTCATTAAGCTC
ACCCAGAGAAATGGGGTTATGAGGCGTGTGCAGCAATCTTTCCCCGTGTGCAGACGCCAG
TCTTTTCAATTCCTCAGCCAGAATGGAGTAGATCTCCTGTAGATCATGCAAACGTTCGTG
AGAAAATACAAAGACAGAGGTAGAGGCCACAAGACAACACTGCAAGACTCTTAGCAGTCG
GGTTTTTACTGCAAACCCAACAAATACTCCACCTGCCTGACGGTGGCGTTTTGTTTCTTT
TCCTACTTCCTGTACTACCACTTCCCTTCCCCAGAATTTCTGAGGACGGCTACCTCTGAG
ATCAATTAGAGAAGCAGAGCATTATGCACGCTTTCTAACGGGGAACTGAACGGCTTTAAA
AGACGCTGACGAGATGCTTAGCCCAAAACCTCCAGCCGTGTGTGACCGACGGAATCAGAA
CGACAAGACGCGAGATGTTCTGTGTGGCTGAGCGGGGAAGCTGTAACCCAACCAAAACGA
TGGCTTTTAGTGTTTTTCTGGTTCAGATTCCCCCTGTGAGGCATCACACATTAGAGGTTC
CTGCACTCTGCAAAAGAAGGAGTGTGTCGGCAGACTCTGCTGACTCACNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAA
AGCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAACACATT
CTCATCAGCTATTGTTTGTTTTTGTAAATATGATCAACAACAGACTTTTTTAATGTCCTG
CCGCGGTCCAGGACAGCTCGTTTTTGCAATTTTTCTTTCTGACTGCATGTTTCCCTTGCC
ACATACTCAAAAACTTACCAAAGTTTGCACGCACTTAATACCCGAAGAAAAGGAATTTGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACACAC
ACAAAAAAAAAGATATGATGACATCACAGCGGGCGCAACCGCCTAAAAAAAACAAACAAA
CCATGAATTGGGCCAAAATCTCTTATGGGGCTCAAACGCATTTCAAGATCCACTAACCCA
AACAGACATGTCGAGGGCATCCGAGAGAAGTTTTATAATTATTATGGGATGGCCACAGAA
CCTACGGCTTGGCGGCCATTTTATGGCAAAGTGTGAAATTCTGGGATTTTCACATTTTCA
TATGAGAAAAGTCAACTTTAGTTCGAGGAATCTTCATGAATTTCACACACGTGCCGCCAG
CTTAACTCAACAACATCTACTGAAGTTTTTATTGACCTTTGATCTCTGAAGGAGGCTGCC
ATCTTGAGTAAAAAAAACAAAACAAATTTAAACTTTTCCAAGGGATCAATCCATCGCCTC
CCAACTCCCCGAGCGTCATTGGAAAGCTACTTAGGAAAAATTGTTGATATTAGAAGTTGC
AGACTTAACCGTGTTAGAGTGGCGAGCTCGCAAAAGTGGCGTTCCTCTGTTGTTGGCACA
TTTTTTATTGCAAAAGTATAGTGCGTGAATCTTCGGCTCAAACTGAACAAAACAACATGA
CATATCATATAAACATAAAAGGAAGGTGGCTGTGGTGAACAAAAAACATCCGTTGCCAAG
GAAATCCAAAAGTTTACTTTTGCCAAATCTTCTAAAATTTACGCGAACATGTTTATCACC
CCCAGATAACAAAAACATTAAATAGTTGCTATGGAGATAAAACAGATAAAAGAACTGCCA
TTTACAAAAAAAAAAGAGGTTTTTCATGAATTTGCAGTTGTGACCAGGGTGGCAGGGGTG
GAGGGTGGAGGGTGAAAGTGAAGGGCATATATCAACTGCTCAGTCAGTGGGGGCAGGTAA
AAGGGGGGTAATGGGTTGGGGCAAGGGCGGGGAGCACCTGCAGGCCATAGAACACAGCAT
TCACTTTTGCAAAGGAGCCTCCGTGGTCGACGTCTAAATTATTTACAGCTGGTGACCTCA
GGAGAGATGTGAACAACCCGCGTGGATCTGCAGACGCGATGGAAAAACAGATTCTGAACA
TTAATTATGCATATAGTGGACCAAAGGAAATCAATAGGGCTTTATGATGTCAGGTCATAA
AAAAAAGGCCAGGTGAAATTCCTCCTGCAGAGAGGGGCTTTACACTAAAAGTATTGTGGG
TAATTAATGGCTTCTCAGGTGTTTTTCTTTTTTGACAGATCTTTAGTAGGTGTAGAGTCA
GTTTCATTTTTACTGTGTTTCACTAAAAACACGTCGTCGATGGAAAATCTGGGTTTGTGC
TTTTTCTTTTTCTTCTAGAGAAGCGGATAAAGTTGTGATACAGGACGTCGACGCTACAGC
AGTGGAGGTTTGCTGCAGAGGAAAATGCTGCATCGGCAGAAAATCTGCAATTTACAGCAA
GGAACCACCAGGGGAGGTGTTTAAAAAACTTCTAGAGTGCCCCCCACCCCACCCTTCATT
TTGCAAAATTCACTTTGGAGTCACAGCAAAGAGCACACAAACAGGAGTGAACTGATCGAT
TCATCCATGTTTTCTGCACGTCTACACACCCAGCTTGAGTTTAGGACGAGTTATTTTTAG
CCTGTGAGAGCTGATCTGTGCATCTGCCCCCCATTCCTCACCTTCCTCTCTGACAGATAC
TTCTTGTAGCCGTTTGCTCCCGTGGTGAGGAGGGTGATGAGGACGTCCAGTGAAGGTGAA
GCGGAGGCTCGACCTGGACGGAGAAAGACACTGTAGTTCAGCTGAAACAAGAAGGTGATT
CAACATTTACACAAACAAATAAACAACTATTGGGCCTTTTAGATTTCATCGTAATACCTC
TACATTAGGGATGTAAAATATACAGATACATCAAAAAAATCAGTAAGAAAAACAGCAGAA
TCCACACATGAATGAAATTATGCTGGTAAAAAAATATATAAAATCGATCAGGAAGTAAAT
GATCTATTTCTGGTATCGGTTTCTCTTCCTGTTGTGTCTCTACTGTCTGCCTTTTTATGT
ACATGTGATGCAAACAACGTCCAATCACAAGCTTGCTTTTATCAATTCCAATGGGCTGAA
GGTCAACCATTTTTTAGGGATGTGTGTTGTCTTCACTAAACATATGATAAGCCTTTGTTT
TCTTTACACCACTGCAAACCATAACTGAATAAAAAAAGAAAAGAAAAAAAAACGTCTGAA
AGGACCCAAAATGTCAGGTTTTCATGTTTAAAGCTGTTGTGTCAAAGACATTTTGTTTCT
GTTGCTTAAAAATAAAAAGTGCCACTAAAAAAAACAATAGTTTTGCTGTTAAAAGATGTT
TATAATTTTAAATGCCAAATGAATAAATATATAGACTGCATCCATTTAGGTAAAAGAATT
GGACTGTATCGACAAAGTTGGTTGAGTCTTTAAATAAATCGATTTGTGGACCATGTTTGA
GGATCGTGTGAGAGGAAAGGATACACAGACCTGCGCTACATGCTTTTATTTTGATATCTG
CAGTGATTATTAACAACACTGGGGCCCAGTAAGCCATGAAGAAAAACTTTTAAGGAGAAA
TATGAATTAAAAAAGCCTTAGAAGTGGAGGGATTAAAAGGATCCACCAGGTACCATCAAG
TTATCAAGGCTACATTTACGTAACATTTTGAATAAAATATTGAAATAAACTGCAGCAACA
AGTACAGTCAATAGGATGCAACACCAAAAATCAACATAACGCAGTATTTGTAATCAATAA
TTCTCACACAGAAGGGGAAGGGTCCACCCTTTGATTTATAAAAAGCCTAAAATATTTAGA
TCCATTCCAATGAAATGTGTTTTTTTTTTAACATGTTCTTGTTGATTTTTACTCATGATT
GAGGACCATAAGTATAAAGAACATTCATCTTAAAATTCCATTTCTCCGTATTGCTTTATT
TTCCAATTATTGTGAATCAGAAGAAAAAAGGCTGTTGGAAAAAGTTGTAGTTGTGACGTA
GCTGCTACAGTCAGCGGGCCAAAAGCTCCCCGCTCCACCTCCATCTGATGCATCCACTTG
CAGAAAAAACAAAAAGGACGTCTGAGTTTCCCTCATCTGAGCTGACATCTCGCTCAAAAC
TGTACGGCTGCATAGGTCCAATATTGCTCACTATTTTTGTTGAACCGCTAATGTTAGGGT
GTGATGGGCTGTAAGCTAGTGGGAGAGAGTGTAAACAATGGGATGACTGGAAGTCAGGGA
AGGCTTCCTTCACATTCACAACCCAAGAGGGGAATTTCTGATGAACTACTGCAGAAACCA
TGTCCTACAGAACGACACAGGTTTTTTATATTATTTAGGCTGAACATGGCTTCATCGTCA
CTAAAAGACCACTGGGAAAGCCTTAAAAATAGATCAAAAGATGAGAGATTGAGAGATTAA
TTTAAGAGCAAAACAAACAAAAAAAATACTGATTTTTGTTCAACAAACTTTGTCAGGTGG
GAAAAAAAGAGAATCAAACCATCAGATTTGTACTACCATGTTTTCTGTCATAAACATAAA
ACAAAGTGATTCTATCATGTCAATAATATAGCCAAATCCAACACATTCTATGCAGAGTAT
AATATAATCCAGCCGAACTAATCAGAAAAATGCGTTAACATGGGATCGCTTTTTTAGAAT
AGATATGCATATTATCCTGCATGTAAACAGTCACTGCTAGAAAAATCCTTACAAATAAAA
TTCCTGTTTCTTCCTTTAGTGGGAAGTCCTTACAGCATGTGTTGCATCTGCATCTTATTG
GTTCCTTCACTCTTTTACGTGCCAAATTACAAACCTCTCTTCTCTAAGTCTGTAGGTGGC
GCTGTGAACTTATTAAGGTATAATCTTTTAGTAAAATCTAGACTTTGTTCATGACGCAAA
CNNNNNNNNNNTGGAGGAGTAGTAAATACCTGTTGTATCAGATGCATGCATTTGGACGAC
TGCACTCCGTATGCATTGTTGACGACGTGAGGAATGTTGTGTTTGGCACACATAGCAGCC
AGCTCTTCCAGGCTACATGACAGTTAGGCAAACGAGAGGTTCAAATCGGGCCTCATTGAT
GCGTTTCAAGGAGAAACAGATGCCAATAAAGACACACCAGACCCCCTTATCACCTGTCAG
GGACTCGCGGTGCAAAACAAGACGTTGTGGAGTGAACACACAGAATGTTCTCGGCGCCGA
GCTCTTCCACTTTCCGCTCCACCGCCTCCAAGTCTGTTCGCAATTCGTCGCCATCGAGGA
CATTCTCCACGACGACGGGTTCAAAGCCTGATAAGACAGGGGGTGGGATTCTATGAGGTG
GAAACATACCGGCGCCGCAAAAAGATTCAGGTCAATCGGTTCATTTCTGCTTGGAAGGAT
TCATTTACGAATCCAGACGGGAATCATCTTCACCTGCCGTGATCATCGACTTGAAACAGG
ACTTCTGGTCGATGCGAGGCCAAATGATGTAGCGTGCTTTGGGTCTCCTGTGACGAAGGG
TGAGGAAGCAAAGAGCCAAGCTCATCCCTGTTGCCATGGGAACAACAAAGCAACTTGCCA
CACTCCGGACACCTAAATCACAAAGAAACTAAAGGTAAAACTTTCAAACTTTGAGATAAC
TATAATGATAAAACAACAGAATTTTACTCATTTACATCATAACCACTTTTTTTTTTTACT
ATTTTAATAATTCTCTTCCAATGTTTACTCTGCAAACTTGTATCCTAACTTGCAGTGAGG
CTCAAATGTTGGAGTTTAATAGTAAAAAAAATACTGGACAGATGGAAAACTGTCAAGTTT
TCACAATAAAAGCAGAAAAAAGAGGAAAGGTGCCATTTTTATTTAAAAAAACGACAAATT
CAAAAACTAAAACCTAAAAAGTAAAGCAGTATTTTAATGAAACTACAACTAGCATTAAAC
TAGAAACTACTTTGAAGCAGAATCCATCAATTTATTTGTTAATCTTGAAATTTCTACGTG
AAGGTTTAAATGAATAGATTACCAGATTTTTTTTAAAACCCAAACCTACATGAAAAAAAA
CATAGTTTAGGATATTCCCCCATAAAAAAAGAAAAGTAATTAAGTGATACATGTTTCTTC
TTAGAATGGTGGAAGATTGGATGTCACCTCACTTTGCTTTTGTTTACAATAACTATTTGA
AAACCTTCTTCAACTATTATAAGATTAAAAAGATATTACAAATTAATATAGCTTTAGGAG
TTGTATGATGTTAAAAAATAACATTATTCAACCCTTTAAAACAAGTAAGGGTTCAAAAAT
AAAGTTCAGTTTAAAAAAATAAATGTATATTTTTTCTGTAAATATCAGTTTTTTACTATT
TAAAACAATAATATCGTTTTAATTTCTTCAGCAGCCTCAAGTGTGATTCATACATTGATC
GAAAAGGTGTCATCAGCAGATTTAATGCATACAGAATTGTGTTGACGATCTCTGTAGTTA
AATTATGAAAGTTTTATCACTAATTCTACAAGAACACAACAAATGTTTCTCTGGCAGAAA
TGTACCAAAACATACAAGAAAAAAAGCGTTTTTTAAAACCGAAGGGGAAAAAAAAATTCA
CAAACCTGAAAGCTTTAAGATGTCAAGCACAACAGAATTGGTGAGTTTGTTGAGCAGGCT
GGAGCCCGCAGCCTTAGGCTGAATAGCAGCAATGTCTCCTGAACGACCAATGCCATGGAT
TAACCTTTGTGGGAGAGGAGAAGATCAACCTTCCAAAACGTCTATACCGTTCATTTGCCT
TGTTCGGCAGTTGGGACATGCATGGAAAATACCAAAAATAAAAAGACATTCCTAACATAA
AGCAGAGAGCCAGGGGGTATTCCAGAAAGCACGTTTAAACTACCCTGACTTTAACCCAGA
ACTTGCTTACTCTGGGTATGTCGGTTCCAAAATCCGGATATGAGTTAGCATAATTACGCT
CGACCCTGGGTTAATGCACGTGAACAGCAAGTACACAAAGACATTCTCAATGGATCGCAC
ATTTCCGGAGTCACCATGGAAATGCATGGATAAAAAAAGAGAGCGTTATACTTCAGTGAG
ACGGAGTTGCAGATTTTAATGAGGGCATTTGAAGATTACAAGCCCATCAAAAAAGTAATA
CGGCTGCATCATCAAAAAGAAAGAGATTTTTGCTTGGAGAAAAATAACAGACAAAGTAAA
CGCACAAGTTTATGATCTTATTTCCAATTACATTGTGATGCATATATATACAACTTATAA
AATTTAAATGAATTGATTCAATTGGTGACAAGTAATTGAGTTAAATGTATTCAACGTAAT
TTCTTATGTTTATCCAACTCAATAGTTGTTTATACAACTGAAATTTACATATATATCTAA
CTAAATGTCATATTACTCCAATTCATTTTTTCATTCATTTTCTATTCCGTTTTATCCCTT
TCAGGGTCACGGGGCTTATCCCAGCTACTTATGGACGAAGGCAGGGGACAGCCTGGACAG
GTCGCCAGTCTGTCGCAGGGTAGAATGTCCTCAATCACACATCCATCCACTCTCACACTC
ACACCTAGGGACAATTTAGAGTTGCCAATCAACCTATGAAGCATGTTTTGGACGGTGGGA
GGAAGCCAGAGATGCCGGAGAAAACCCACGCATGCACGGGGAAAACGTGCAAACTCCACA
CAGAAAGGTCCCCCATTGATGTTCTGGGGGCCTTCTTGCTGTGAGGCAAGAGTGCTAACC
ACTGCGCAACCGTGCAGCCAACCTACAACTCAGAGGCGAATTTCTGATGAACTATTGCAG
CTCTGCAGAAACTATGTCCTAGAAAGTGACACAGGCTTTTTTTTATTTAGACTAAAAACT
GCAAATTTATGATTAAAAGACCTCTGGGAACAGGACTTTAAAGGTGTTTACCTAATGGGA
TTCCACAAAGCTCTATACTAGGATACATAAGAATTTGAATGTATAGAAAAATTGTAGGTG
ACTGTTGCTTTCTTTTTTACACACTGTTTTCCGCCTGACATGCTTGCACCTGTAATGTCG
GCGTGCCACGAGGCCGGACGCCACCCTGCCCTCTCTCTCGCCTACGCCACAGTTCCCCAG
GAAGTTGTTGCTGTCCATCACGGCCAGCTCGTTCAGGAAAAGCTCTACTGTGCTTTCGCT
CCATCCCTCTTCGGGGCATTTACCCTAAAACAAGCAAAATGTGAATGAAGATATGGCAAC
ACCTGCGGGGGGGAAAAAAAACCCCAATGAGGAGAAACGCTCCTTACCTGTTCCAATAAT
TGTCTGATGAGTTGCTCATGGCCACGTCGGGCCTGTGACCCCTGCCGAACATAGGAGGGC
GACACTATTTTCTCACTCAGGAGGAAGTTTTCACTGTTCAT
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