SelenoDB
Release 2.0
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Transcript Report for SPT00001973_2.0
Identity
TranscriptSelenoprotein J (SelJ)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00001973
Transcript release2.0
External IDNone
Gene SPG00001879_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001973_2.0 # Transcript # Selenoprotein J (SelJ) # Medaka (Oryzias latipes) # Full length # Reverse
TGCAGACATAAAAAAACATCAGGCTTCTGCCTCACATAAGTTTAGACAAAAGCCTTCATT
CGATGCTCTGCCAAAGCTCAGCAATCTTCTATGATGCTCTCAGTGCCTCACTCTTCTCAT
ATGACTAAAGATGTTTGGTAATCTTCTTGGCGTGCTCCAACACAGAGTTGTATCTCAGGG
TTTTTTCCCTCCAAGATGCTGGGATTCCCTCAAGACCAACCTAGAATTAGCAAATGCCAT
GAATTACACCAACAGCACTGACTTGTAACGGAATAGTGGCTAAATTAGGCAAATGATCTG
ACCTGAGCCCCCAAACATGCTCCGATGAAGGACCCTCGACTGCAGGTGCACCCACCGCAG
CTCATGGTGTCTCTGACAGCCGTCTCAAAGTTCTTGGCCGTTAGGACTCCGTGCAGCGCT
GCCTGGAATGCACCTGGCAGACCTAAAAAAATAATAATAAATGCAATAATTCATAATTAT
TTGAGCCGAAGTTCAAAGAATTAAGATTTTCTGTCACCAGAGACGCTTAAACTGTCAAAG
TACCTCATGTGTTTGGGAACACTGTGGGGATAATCTCCTGGGGAGTCTTTGATAAATGCT
CTTTCACCTGATGAATGTGGCCTGAAATAACAACAGGACATGACGGATAACAGCATGACC
CAATCTCATGACTTTATCAGTAACAAAGCAGCAGTTGATCTCACATACCGACCACCGCTT
TATCCAAATCCTGAGGCTGCTTTCTCTTCAGATCATTCAGCTGATTCAGCACTGCCTCCA
GGGCTCCCGGATCAGCACCGTTCAAGATGAAATGTTCCAGAAACCTCAAGAAATGAATTG
GGGGATTTTATTTTATGTATTTATTTTTATTGTAGCTCTTTATTAAATCTAAATTTGAGG
ATAAGTGGGATAAGTTTACATCATCAAGAGTGGCACTGAAAAAAGATAGATAATAATATA
AGGATCTATCCCATTTCATTAGTGCCACCAGGAGAAGAAACATGTTAAAAACCTTGCTGC
CCCCAAAGTTTCTGCAACACATTCGTCGCTGTTCTGAGTGACGCGGACGGCCTGTTCGAC
CTTCTCCAACATGTCAGGCTGCCCTGCATAGAAAGCCACAACAGGAGCCAGCTTGGCTAC
ACCGTCGATCTGACAATCCGTCTCACAGCCTGCAACAGAGAAGACACGTCAAGTTTGTTT
GTTTTAATAGCAGCAAACTGTTTTATTTTATTAATTTATTTTTGGAATAACCTGTTTCCT
CTTTTCCAGCATCCATATTCTTTATGAAACTCTTCAAACATGCCTGCCTCCATGGTCCCT
CAATGGGCAGCTGAGGTCTCGGCCCTGATGAATTTAAAAACAAACATTCTATGAGTACAA
AGATTTTCTCCTTAAGGGAATACCATAATAGTAAATGCAGCATTTCACTCCAGAGGAGCT
GAAAAGATCCGTACCGGTTTTGTCTCTGTACGGATCATTGATGGGTGTGTCGTACTCTGA
ACCCGGTCCAAAGAACTTCATTGTGCGCTGCTTTAGATGTTCAACGTTTAGACCTAGAAG
ACGACAGTGATCAATGAATCATGACGGGAGTTAAAATGACATAAAATATAAAATATCCTC
AAATTCATAATTTGTTAATTGATTAAAATTTGGTTGATCAATGCCACATGACTGGGGCGA
TAAAAATCTCATTTAGTTGTTTTGCGGAGCATCTTTGTGTTAAAAATCTACCACTTTGTT
GGGTCCAAATACAGATATTAGGAGAGACTGGCTCACCTCCACATTCAGACAAGCTTTCCA
GCAGCACATAAGCCTGGTCTCCGTAGCAACTCTGCTCGCCCGTCTTCCTTCGGTAAAAAG
GGTTGGCAGACTCAGAACGGAACTCTGGGTTTGAATCCTGAGCCAGTATCCCCTTCAGCT
TCTGCAGGTCATAGACCCAGTGCAGAGGCTGTGCTGTAAATACATCATCCAGTCAGTTTT
TTTTTTTAGTTCAGACGAAGATCTTTACAGGTAATAATTACTTGTTTGATTGGGTTATTG
GGGGAAATGTGATAGAAATGTGAACAAGCTGTTCAAGAGCAAATACTGATGTGGTAAAAG
GTATGCAGGATCCTTTGAAAAATAATGACACAAGTCCAACTCCGACCATCTTTTGATCTA
TTGTAAAACCATTCCCAATGGTATTTTAGTTATGATTATGTCGATTTTAGCCAAAACAAC
CCAAAAAACCTGGGTCGTTTCCTAGAACATCGTTTCTGCAGAGCGGCTGGAGCTCATTAA
ACATTTGCCTTGGAGTAGTAGACACAATAAACCCAATTTTCCTTCGAGGGGGTGTTTAAA
AAATGTTATCCGACTGAATTAGATGCAGAATAAACAAAATGATAACCAGTCAAAAAAATT
ACCTGCAGCATCTGCAACAGCTGATCCAACAATGGCTCCTATTGCCCTGTCAGCCACAGC
TGAGGCCAT
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