SelenoDB
Release 2.0
Chart Advanced
Transcript Report for SPT00001977_2.0
Identity
TranscriptSelenoprotein N (SelN)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00001977
Transcript release2.0
External IDNone
Gene SPG00001883_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00001977_2.0 # Transcript # Selenoprotein N (SelN) # Medaka (Oryzias latipes) # Full length # Forward
ATGGCCGCAGACGTGGATAAAAAGACTTCCGAGGCAGAGCGAAAGACAGCGGAGAAGAAT
GGGCTCCGAACCCCGGCCTCTGAATCCAGGTTCTACAGGGGGGTGTGGACCCTGATGCTG
GTCTGTGCTGCCCCTCTTGTTGCTTATGGGATCAAGTACTACCAGGATACCCAGCTCCTC
AAACGTCACGTGAGACTTTTTTTGTGTTTACAGCTCAATTAAGATAACAAAAAAGTTAAA
TTACATTAAAAAAAATCATAAATCAGTATAAGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAAAAAAATCTGTTGGAATATTCTTGATA
ACCCGCTGTCACTATTTTTTTTCCTCTGCAGGAAGAGAGCATTCGCGTTTTGGGCGCTGA
GGGTCTTTTCCTTTTCTCCTCCTTGGACACGGATCATGACCTCTATCTCAGCCCTGAGGA
GTTCAAACCAGTTGCAGAAAAGCTTACAGGTTATATCATTTTAAGTGATGATACAAGTCA
TTCCTCTTCTTTAAAGTCCCACTCCGATCAACTTTAAATCTGTATTGTAAAAGCCTTTCA
GTGATCTTTTAATTATGATTATGCTGGTTTTAGCCAAAAATAAAAAACTGTCGTTTTCTA
GCACATCATTTCTGTAAAGCGGCAGCGGTTCATCCGAAATTCACCTCTAAGTTGTGGGCG
GTACTATTGGCACAGAGTGACCCCCCCCATTACCCATAACTGAGAGCTCTCCTGCTATGC
GAGCCCAAAACACCTCCAACCTAACATTCCTGGTGCAACAAAAATGGCGAGCAATGTTTG
AGTTATCCGCCGTACAGTTTTGAGCCAGATGCCAGCTTGGAGGAGGAAGCAGGGAGCTTT
GGGCCCACCTATTGTATTTCTTACATCACAAATGCACGTTTTTTTCCCAGCTGCTTCTGA
CTAACAAGTCAAATACAGAAAAACTCGTAAATGCAATTTTAAGCTTAATTTTCTTCATAC
ATGTCTTCTATTATGAGAACAATGTCACAAGAACATGTTAAAAACACCAAAACCACAATT
TCCATCAGAGTGGGTCTTAAAAATGACGATAAAGACGCTAACAAAGTGATGTTCCTCAAA
GGAATCACCCCTTCGGTGGATGTGGATGAAGAAGTGATCCAAGACCCCAATGGAGAAACC
TTGACCTTGGAGGCTAAAATGCAGCCCCTGCTGCTTGATTCCATGACGAAAAGCAAAGAT
GGCTTCCTTGGGGTATGTAAAAAAAAACTATAACTTTTGGAAATTAGTGTAAAATAGCAA
AGCCACCAGAGTGTGGAACATTGACTGTATATGAGAACTGGACTGTGTGACCCTTTCCCT
CGGGTATTCCAAACAGGAAGTGCCTGTCGGCTGCAAGAAGCCAAAATCCCATAGACTTCA
ATTGAGAAATAAACAGCTATTACTTAATCAGTCTGTGTATCAGAATAACCATTTTTGCTC
GGATGCCTTATTTTTTACATGTTCTTTCTTATTCTTTTCTGTAGTTCAATTATAAACTGA
CCAATCAGATGCCTTTATAAAAGCATGTGATGCCTGGTTGCTGTCACTTGAACATTTGAA
GCATTTGATTGACAGAAACTTCCTGTCAACTGCTTTCAAGTTGTACGGCAATTGGCCAGA
ATAGTTGCCATATAAAAAATGACTTCAATCCAACTTGTACCAATCACTACTAACTGACAT
CGTCTGGCTCCAATATGGCTGTGCTTGTAATGAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACTTGGTGGGTGATTCCC
AGCGAGCTCAACATCTTTACTGGATACTTGCCCAACAACCGTTACCATCCTCCCACTCCA
AAGGGCAAGGAGGTATCCTGAACATCCCGACTCTGCAGTGGAATTTCAACTTCTACCTCG
TGTACTTTGCAATGAACTCATTTTTTTATCCTGCAGGTGCTCATTCACTCCTTGCTGAGT
TTGTTCCATCCACGGCCCTTTGTCAAGCCTCGCTTCGCTCCTCAGGGCGCAGTCGCCTGC
ATCCGTGCCAAAAATGACTTTTACTATGACATCGTCTTCAGGTGAGAAGTCAGTCAGGAA
GATGCAAAAACAACAGTGGATTTTTATCATCTAGACACTAATGCATTTTATGCATTCCTC
ACCTCAGTATTAAGTGTCCTTAACAAATATTTTCTCCTACCGTTTATGTTTTGGTAACTG
ATTGAAATAGCAAAAGAAAAAAAATTTCACAAATTTACAGCATTATCTGCCTTTAAAAAA
CACCCTTTATTTTAATGAACATAAAACAATCTTTGTAAAATCCAAACTTTAAATATTTCC
TATCTTTAAAATGAAAAACAAGTAAAGCCTGCATCCATGTTATTCCCACTGACAGATGGG
CAGCGTGTGGTAACTTTTTTTAATGCTAGCTATGGATTTGTTGCCATCAACATTCCTGGT
GCAACAAAAATAGCGAGCAATATTTGAGCTATCCTGCCGTACAGTTTTGAGCCAGATGCC
AGCTTGGAGGAGGAAGTGGAGCAGGGAGCTTGGGGCCCACCCGTTGTATTTCTTACATCA
CAAAAACGCATTTTTTTTCCAACTGCTTCTTACTAACAACAAGTCAAATACAGAAAAACT
CGTAAATGCAATTTTAAGCTTAATTTTCTTCATACATGTCCTCTATTATGAGAACAATGT
CACAAGAACATGTTAAAAATACCAAAACCACAATTTCCATCGGAGTGGGTCTTAAAATGA
CGATGAAGACGCTAACAAAGTGATGTGACAAAGTGACAAAGTGATTAGCAAAAGAAGAAA
AAAAAATGTCACAAATTTACAGCATTATCTGCCTTTAAAAAACACCCTTTATTTTAATGA
ACATAAAACAATCTTGTCTATGAAGACTCTCATTCATCCAGGTTGTTCCAATTGTAGTAG
GTTTAGGGGATGTCATCTGGACTTGGTTTTTAAAGTTAGAAGACGTTTCGCCTCTTATCC
AAGAGGCTTTGTCAATTCTGAATTAGCTGGTCTAAGAGCTGGTATATATATGCGTTCAAG
GGGGAGGAGTCAGACCTGAAACTGGAGGTATTGTCCAATAAGCCTACATGGTTTCGGGTG
GTTAATAGTCCTTTGTCCTCTGCTGGGGGTTGGGGAGCCAGTGACTCACTCTCCAAATTG
GTCCTCTCTTTCAGCGGTTAACGACTCAGGTGGAACTGGTTTGGTTTGTTTAGGTTTCAA
AACACTGCCGTAGATGGATGGAAGAATAAACCTGAGACCACCATTCTTATTAAGAGAAGG
TTTATCCTTCTTGACAAAGATGGCTTCTTTCACTCCTCGCTCAAACCATCCTTACCATAC
ACAACATTACTCTGTTGTGTACTCTATCCACTGCAAAGAGAACTGCAATGAACAGTTTAT
AGGAGAAACCAAACAACCGCTACACAAGCGGCTTTACCAACATCGCAGAGCCAACCCAAG
TGGACCTGAGTCTTCAGTACATCTCCACCTGAAGGCCACAAACCACTCTTTCGAGGACAG
TGAAGTCCGAATTCTAGCCAGAGAGAAAGGATGGTTTGAGCGAGGTTCAGTTTCAGGTCT
GACTCCTCCCCCTTGAACGCATATATATACCAGCTCTTAGACCAGCTAATTCAGAATTGA
CAAAGCCTCTTGGATAAGAGGCGAAACGTCTTCTAACTTTAATAACCAAGTCCAGATGAC
ATCCCCTAAACCTACTACAATAAAACAATCTTTGTAAAATCCAAACTTTAAATATTTCCT
ATCTTTTAAATGAAAATCAAGTAAAGCCTGCATCCATGTTATTCCCACTGACAGATGGGC
AGCGTGTGGTAAGTTTTTTTAATGCTAGCTATGGATTTGTTGCCATCTTTGGCAGATCCA
AAGTAAAGGGAGGCCGTTTCAGAGCTGAAGATTTTAAGGTCACCTGTGTCAAACATGCAA
AAAAACACATTTGAGAATGACTTTAATTTAAAAAAAGAAGACAAACGTAACAAAAACGTA
TCATAATAGTAGGTTTGGAACTAGATTGTAATTATGTGTGTTGGTAAGTGGGACTGTTCT
ACACACTTGCTTGTGTTGCAAGCCACCTAGTGGTAATTTGTTGAACTGATAACTCCATTT
CAAACTGGATTCAAACAGGAAGTCAGAGTGTTGGCGTTCTGGTCCTCCACAGCTAATTTT
TTTCATAAACTCTTTTTTTTTTTTCTCCTGCAGGATTCATGCTGAATTCCAGCTCAACGA
TGTCCCAAATTTTCCGTTCTGGTTCACCCCGGGCCAATTCACCGGCAACATCGTCCTGTC
TAAAGACGCTTCCCATGTTCGATACTTCCACCTCTACGTTCCAAATGATAGGTAAGACTC
CTTTTNNNNNNNNNNCTTTTCAAGCCGTTGCGCAGTAGTTTTGCATCGTGATCCCGTTCC
ACAGTCAGCTTGTGTGCTGGTTGTGTTGCAGATCCCTGAATGTGGACATGGAGTGGCTTT
ATGGAGCCAGCGAAAGCAGCAACATGGAGGTGGACATTGGATACCTGCCTCAGGTGCTGC
AGTACTGGTGACACGTGTTACCATTCATTTCTGTTTTTCAGTTTGTCTAGTCACGAAATA
CACTTTCTGAGACATCCCTGAACATCGGAAGTTTTCTATCCAGATGGAGCTGCAATCCAC
AGGCCCCTCTACTCCGTCCATCATCCTGGATGAGGAGGGAAACATCATCGATAGAAGAGA
CAGCAGCAGTGAGCCCATTCAGTTTGTGTTTGAGGAAATACACTGGTCCTCAGAGATCAG
CCGGGAAGAAGCTGCTCGCCATCTGGAGGTCACCTTCTACCCCTTTAAGAAGGTGACCAC
CGTGGATTTAGAGGATGCCATTAGTGGATTCTCAGTGATGTGAGAAACACGTGTGTTTCT
TTGCAGGTACCATACTTTCCCTTTCCAGAAGCTTTCAAGAAAGCTGAGGCAGAGAAGAAG
TTGGTGCATTCCATTCTCCTTTGGGGAGCTCTAGACGATCAGTCCTGCTGAGGTGAGAGG
ATTCATGAGACAAATAACTTTAAATTGAGTTTCTGGCTGCTCCGTTTAGGAATTTTTCCA
CTTCATAAATGACCTAATGTGATGTTTTCTTTTAGTTCTCCAATCTTACAGCCATATAGT
AAACTCAATACGCAGTAAATGGCAGATTCTTACAAATGAGATACTTTAAAAAAAGATACT
TCCAAAGCTTTGAAATAAAAAATTCAGTGGATCAATTGATTTACATTGTTTAGAAAAACT
TCAGAGTTTAGAAAACTGAGATTAAGCTTACTTGAAAGTTGTAAAAAGTAAGAAAGAAAT
ACAAAAAAAACGTAAAAAAAAAAACAAAATAAAAAATTCATACATGGGTAGATGAAGTGT
ATCCCATGTTGTACTTAAAAAAAAAAAATATGGTTCAATCCATTGTCATCTCTGCAGGTT
CAGGGCGAACTCTCCGGGAGACGGTCCTGGAAAGTTCGCCCATCCTGGCTCTGCTTAACC
AGAGCTTCATCAGCAGCTGGTCTCTGGTCAAAGAGCTGGAAAACATGCAGGTGAGCAACA
GCAATCACAGAAGATTCAAAGGTCACCTTAAAGGGGGAAAGAAACTTGTGTTTTTAACAT
GTTCTAGTAGCATTTTTCTGATGATGGACAATTATGCCTAAAATATATATAAAATATTTC
TTTATTTGAATTGTAAAAACATGTTGCTGAAAAAAGTGAATTTGTGATGTAGAAAATATG
CTTGGGCTACAAGTTTCCTGCTCTGAGCTCTCAGCAACGGGGAAGGGAAGTGGGCGGGGT
CGCTCTGCACCAACAGTCCCGCCTACAACTCAGAGGCAGATTTCTATTGAACACCTGCCG
CTCTGCAGAAACTCTGTCCTTGAAAAGGACAGGTTTTTGATTTTGCCTAAAAACAGCATA
ATCATAATATTTAAAAAAAACACTTTGAAAATAGATCAAAAGGTGATCAGAGTGGGTCTT
TAAATAGATCTAATAAATGAATGTAATGTTTTTTATTTTGTTATTAGGCTGATGTGCAGC
ATCCAGAGTTAGGCGAAAAGGCTCGCTTACACCTGGAAAAGTACAGTTTTCCTGTGGAGA
TGATAGTGGCACTGCCCAACGGAACCATTGTAAGCATGTCTTAAAATGTTAAACTGTAAC
TTTACCGTACAGTAATGCCTAGCCCATCAATCAAATTGAGCACAAACAATTACCTGATTG
TTATAACTGTTCTAATAAATGCTTATAATTTATCACAAAAACATCTCCAAACAATCTCCA
GTTGGATCTTAAGTCTACATTTACTTTTCTATCATATCAACTGCCATCCTGTTGCTATTT
GGGGATAAAAAGCTGCGTCTTTGTTTAGGTGCACCACATCAATGCAAACTACTTTCTGGA
TCAAACTGCGATGAAACCGGAGGAAGAAGGCGCGACTGTCAGCTTCTCAGCTGGGTTTGA
GGACCCATCAACCTCAACTTACATCAATTTCCTGAAGGAGGGGCTCCAGAAAGCAAAGGA
GTACACGGCACAGTAACTCGCTAGAGGACGTAATGATGGTGCCTTTGAATGTCTGTGTTG
GCAGCTGGAAAATGGATTTAGTATTCTCTTTACTATTTAATTTAACATTTTTTATGCAGT
TTTTGGATTAAAAACTTTATTTCTGGTCGCTGCTTTGAATAAAAATATATAAACCTGGTA
ATCCCCATTAGAGTTGAGCACAAATCCTACCTGATGTCCTTTAATTTCTTTACAATGGTG
GTTTTACATGAGCAATAGTTAACGGTGAGTCTTCAAGCTGCCGAGTCATCCAGAGTCGGA
GCGCTGTTCGTTTCCTCCAGCTACGTTTCTGCAGTCTGTGAAGTCTTGGCCTGAAAGCTC
CATCCGAGCCGGGCGAAGCCTGATGTCATTGCTGAGGC
Chart Advanced