SelenoDB
Release 2.0
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Transcript Report for SPT00002176_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesPetromyzon marinus (Lamprey)
Transcript IDSPT00002176
Transcript release2.0
External IDNone
Gene SPG00002083_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00002176_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Lamprey (Petromyzon marinus) # Full length # Reverse
GCCATACTGAGGCATGCTGTAGCTGTAGCTTCCTGTGTACTGGTCGTATCCCCACTGTGT
GTAGTAGTTGGGGGGCTGGTAGTACTGCCCGTAGCTGTAGCCTTGGCTCTGTCCGTACTC
CTGCCGAGACCTCCCAGCACCGCTGGCACTGAGAGCACATGGGTTCAGCTTGGGCACAAA
AAGACGCACACACAGACACGCATAAATACACCGGCATACATACGTACATATTTTCGTGCT
GCGCTACAAACCAGGGCACTCAAGTTCGATTCCCGCTCACGGCCAACACCAGTGACGATG
AGCTAAACCGGTCCTGGGCCTCTCCTAGGTTGTCTCAGCCTCAATAGAGTACCTGGGGCA
GTGTGTAAACATTGCCACTTGGGAGACAAAGGCGGCCGGGTGTGCTGCTGACCACCCACC
CCTTCAAATGCTGTGCCGGCCTTCATAGGTGCTACTCACTAACATCACTTGCCCCAATGT
ACATATAACACATATTGCAATGTTTACACACCACACCAGGTACTCATTCATGGCACAGCC
GACCTAGGGGAAGCCCAAGACTGATTCAGATGATCGTCATTGGTGTTGTCCGGGGGCGTG
AACCAAACTCGGTAGCCAGGTTTGAAGCGCAACGTGCTAACCGCTGCAGTACCACTCCGC
ATAAAGTGTACACACACACACATGAACATACATTATGTGCACGCATATATGTACACAATC
GCAGAGTGGAAAGTTATCACTGTTAAGTCAGTGCCCTCGGAGACAGGATTGATAAAGATA
ACCTATTTATAGCGCAAACACATGTAACCAACATACAGACAATGAGTACACAAACTTCAC
ACTTCTGTTTCCCGGACCAGCTCTGAAGATATAAACGGCCACAATAGCAGCGGTCAACAT
GTACAAGGGTGGACCATTCGACTCAGTGGCGGTGACGTGGCCGAGTGGCAAATTGCGTTC
GCGGATCGAATTCCAGTGGCCGCCCCGGTTATCACTGTGGGCATATCAACCTTAAACCTG
CTACGCACTGTCTACCCTCACACTGGATGTTAAAGATCCCCCGGTGTCCCCCTCCCCCTG
TCTTCCTCCAGTTTGCGAATTACATTTCCCCTTCGCCCTTTCCCCTCACCCAATATAAAT
CTTCACGTCCCTGCACGTGGTCACCAATCGGGTGGGGTAGCTAGTCTAATATCCTCCCTT
CACGAGGTCCTGTCGCGCCAAATTCTAGTTGCTGTTCGAGGTGTTTGTGGTTCCCGTCCG
TTTGCGATTGGCGTATTGTGCCGGGCTCGCGTCGCGCTGCAATAAACAAAAAAACTCAAA
GTAATAGATCCCCTGATGTCATCCGTAAGAGTAGGCCATTGTGTGCCGGCGCCATCGTCA
AAATTCGTCAAACGTGAAAAATTACCCGCAAATTACACGATCGGAATCTGCACAGCGATC
ATTGCTCCCCGACCACCCACTGCGAAAACTTGGAAAGACCCTCCTGAAACAATGAATCGT
GAAACTGAACAAGCGGTAACCGCAGCCAGGGAGGGTACTGCAATGCTCTCAAGGTCTCCC
AATAAAAATGAGGCAAAGGGTTTCTCAACGGGCCATTGCGCACGGCCCTTTGTCAGAGGG
CTCTTAACTGGTTATAAATATACACCATTCACATACATTAAACTATTTTTATTCCACCAG
GTAAGGTCCACTGAGCTACGTAGCTCTTCAATCACGAATGATAGCTCAACGAAGTGGCTT
ATCGTGTTGAAATTTATAGCGGTCAAACCCTCTAAACGCACGTTGACTCTAAATGTGGAG
GGAAAAACCGGAGGACCCGGAGAAAAATCCGTGCGACCACGGGGAGAAAATGCAAACTCC
AAATATACAGCAGGCGTCAGGGTTGGGATCGAACACACGACCTCCTGTATACCACGCGAG
GTAGTTAACATCTCGCCACCGTGGCGCCCTACATGAACATACACGCATATGTATGTACAA
GCATACCAATATAATTTTAGTTGTGAGCACTTCAGAAGAAGAGGTTGCCCCGAGGCATTG
CTCTACTGGAATAGATTTAGCCAACTGGCATTGTACATCTCCGCGGCGTTCATCAACAGC
AGGGGACATTGCCCACGGGCAACAGCAGGCTAACAGAGTGCAGTATTCAGCCATAGAGAT
AATGTGTGGTGTGCGGTAGTGAATCATAGCTCGGTTCTTTTAATTACCGGCTAGCTGAAA
CATTAACTGGCGCACTGATCGCTTGATACACGTGGCACTTAAATTTGGTTGGCTGCTTAA
GGGTGGTGGAGGGCTTTGCAACAAAAAATGTGCCCGATCAATACGTGGCCTAACCCAAAA
ATGAAATCTGAGTAATATTTGGATAACGCTTATGGAGCGCCCAGAAGTAATAATTTTCAT
TTATGGATGCGAGGAAGCGCCTGCACGAATAGTCAAACATTCTTGGGATGAGTTCCCGCT
AAATTTTTTTTTAGATTTTCCGTTTTTTACAGAAAAACATTCACATTTTTGGGGAGGATT
TTCATAGGATTCACATTACATAAAGCATGTGAAAGTGAAGTCGCCCAATGTGACGCAACC
CCACTCTCGGTGGAAACTCAAGGACGTGACACAGTGTAAGTGACATCACTTTCTGTGATG
TCATATTTTGGGACCAATCCGAAACAACAACAAAAAATCTCTCGGATCGTCCAAAATTTC
ATCCCGAGGTCCAATAAATATCCAGATTGCTTTGGCTTAATCCGAAAATCTGGAGCACAA
CCCTAAGGCATGCATCTTCCGTAGCCAAGATGACGATGAGGATGATGCAGGATCACCTCT
TGGGCGTAGCGAGGCTAAGCTTGATTGGTCGATTGCCAAGCCCCGACGCTCCTTGCATCT
CCACCAGCGCCCTTCTCTGCTCCGTCTCTTCGCCAAAACGCACAAACCCGTATCCTCTGC
CGCACCACGCCACAGCACACACAACGTTGCACGCTTTTGAGGCAAAACCGCATGCATGAT
CACAATTGTGCATATAACACGGCGATGACGATGATTATGATGAAGCTACTAACAAGAAAA
GTATGCATTTGCTTCAATGAGCTCAAAGGAAGCAGATGTGGCCATGCAATTAGACATCTG
TATAATACAGGCCTTGTTGCAGGTGACGGAAACGCCGACAACAAGTCTCAAAGGCTAAAG
CCACTAGGGTAAGTCTTTGCTGCCCGTGCCGACAACAAGTCGTTTTCGCTGTTAGACCCG
CGTGCCCTGTGGGGCGCTCACCTCGAGATGCCCGACAGGTCGGTGATCACTAGGGTAAGT
CTTTGCTGCACGCGTTTTTCACACAACGCGTTTTCGCTGTTAGACCCGCGTGCCCTGTGG
GGCGCTCACCTCGAGATGCCCGACAGGTCGGTGATCACCTTGCCGGACATGCACGACGGA
TATTTCTGCAGGAAGAAGTTGTACAGGTGGTGGTTCTCCACCTCTGCGGAGAGGTCACCC
ACAAAGATGGAAAACTCCGGGCTGGGGGGTGGGACAGAGGGTGGATAAATAAATGAGTGG
GGTTTCAAAATAGATCACAAATAGATCTATGTGATCCACCAACCCTTGCCTGCACAGTGC
TGGATTCCCAAGTGTGCAGCACCACAACCGGGAGATTTAATTTTCCCAACTATGCCAGCA
AGCTGACCAACATTAACCATGGCCAAATGCCACAAAACAACAGAGCACCCCAAACGTAAT
ATCACGTCCTTCGCACGTGTTCAAAAACGCGTTGTGTTTCAAGATCCAACGTTTTTTTAT
GGACTCTCTCGGGGATGCAGGCGGCCCGAGAGTCGGTCGCGTAAAAAAATGACCACGAAT
TAAAATACCATCGGTACAATTTGACGAATGCGTTGTGAGCGTAAGAATGTGTTTTAATCA
GCGGGTCAGATCCATCGCTACGCGTGTCATGATTTGCATGTGCAGTGAGAGAGTGCGTGA
ATCATCCACACCTCTGACTCCTCTGTGGCCTTGGGTTGAAGACGACCCTAGACACAAGGA
CACTGTTAGCAAATGGAGCTTGCTGGCCATTAAGACAAAACCTGCAATACTCCACAGGAA
CACAGCGCTGTTCATTCAACCTTCATTTAAAAACCAGTAAAACAGCCCTGGTGAAACCAG
AATAGGCGTCTCTTTTGTAAGGAAAAATAGAGGTTGTTCCCAATCTTCAGTTTAATTGGT
CGGCCTCTCTTGATGGGGAAACAAGCAACATGCTGCCTTTGTATTCTTGCAGCTTACGTC
AACACGAAGCAGGTGTCCAAAAGCATCACGGTCGTCCCTCGGTTAACGTTTTTTAATCCG
TTACACGAAAACTGTTAACTAAAATAACTGTTAACCGAAGTCACTTATAAGTTGAAAAAG
TAATAATCACCGAGTCTGCAAGAGAGCTGTTTCCGCTGCCAAAACAGAAAGCATAATGTA
AAAAAAAAGCCAGCCGAGGTCTAAACGCTCATAAATGGCCATCGCTGATTGGCTAAGGCA
TACTCAGCCCACTCACGAGCGCTTGGTTTGGCCGAAATTGGCGCCCGCGTGCATCACGTA
AACATATCGCGAATCAAATTTTTGACGCGAGTCGAAACCACGGCGGTTCCTATGGGAGAC
GAAACTTTAACTAAAAAAAACGTCAACCAATGTCACCGTTAACCGAGGAAATGCTGTGGA
TTTTTCTCCACTGGCGACCCAAAGATCGGCTCGTGCGGCACAGCCGGGCTTGCGACAGCC
GCGAGGCTTGGCGTGAATACGGGAGGGGGCGGGGGGGGGGGAAGGGGAGGATTACCACCT
ATTATCTTCCCAGAAGCCGAGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTTGTGTGCAAGAACCCTATTAGGCACCGTTAGGTCAGTGGGTATCGTTATCGTGG
TACAGCAGGCGCGCTCGCGATCCTTACCGTCCATCGGGTTGCTTGTTGTGTGTTGCGTAG
TTGAGTTTAAACCTCCGTTGCTGAAACGCAAAGGAGGAAAATGTTACGTGGCGCCACGCA
TCGTCCTATGCAACTACAAACGGCTCTTTGTAACTTTGCGTTTTGTACCACTGCAGACTC
CGACCCCACGTCCCAGTATGCAACTTAAGATCTACCTCATTGTCATTTGTTGCCCTCTTA
AACTTAATACAAAACATCGAAGTCATACTTTGCCTGTCAAGTCAAAGCGTTTCCCTCCCC
AAACAGACACTGGGCTGTGGTGGCCCTCAGCCAGCGGTGAAAGTTTCACATTATTATGGC
TGGGGCCAGTCTCTCCCTATGGGACGGCCCCTCCCACCCTCGCCCTCCCCCACAGCGCAT
CCCACAGAGCGGCACGTGCTGTGTCGAGCGCTGCAGGGAGGCCGCTATGCATGGGGCCGT
TGGGGCCCGTAGCCACGTCGCCCGCACTGACCGGGTTGGATCCGGGAAGCGCCTTCCCAT
TGAGCCTGTGCAGGCACCGCTCCGCGCTCGACTGGTCCGAGAACTCCACAAAGCAGTACC
CAGCCGGGCCGCTGTGAACACAAAGCACACGGAGACGCAGATCGCCTTGCCTGAGCCTGT
GGATTATAAACTGAACTATATTTATTGTAACAGGTAAGACCCACGGAGCTACGTAGCTCT
TTTTCAGAAGCGACCTGGCCACAAATGATGGCTCAACAAAGTGGCTTATCACGTCGAAAT
ATATAGCAGCCAAATACTCTAAAAGCGCATGTTGATTCTAAATGTGAAGGGAAAAACCGG
AGGACCCAGAGGAACTATACATGACCATGGGAAAAACGTGCAAACTCCAAATATATAGGT
GTCAGGGTCAGGACCGAACCCACGACCTCCTACCAGGCGAGGACACCTTTGAGGTTAGAG
CTATCCGATTATCGAAGTAATCAATTACTCTACCCAGTTGCAGTTCAATCGCATGATTTT
TTTTTAAATCTTAATCATTATTGTTGTTACTATGCTTGTTCACCCAAGAAAGTCTCAAGA
CTTTCTTCGGAAGGACTCCATTAGGTTTTCACAGTAGTTGCAATGTATGTATGTTGAACT
TCTTCTGCACCAAATACCAACAGTGCTAATTGGAGGTGCGGGTGAAGGACAATAAACTGA
ACACAAAAGGCGTTCCAGATGGCCACAGAAGCGCATGTGAATGCGCGCGATGCAGTCACC
ATCTTTGTTCGATAGCTATGTGTAACCCCAATTGAGTAATGTGCAGGTAATTTTTCAGCA
GCATTGGGATGTTTTGTCCAATACCAGTAACAATATATATTTTTTTATTAGCTACGGGAT
GACACTGGATTGCCCGGAGGAAACTCACTCAGAACAGTAGATCGTATGACCTCCATGCAG
AAAGGCGCCCCAGTCGGGAACCAAATCGAGGAACTTCTCACCGTGATGCATGAGCGTTAC
GCCCGGCCATGACTAATCGGTTAATGCAAAATAGTTGGGTGGTGATGGGCAGGGCTTGGT
CAGAATCAGAATCTTTATTTATACTGGAGGAATCCGATTAACTATAAAGCTCTCTTTCAC
AGAGCTGGTGATGTCATCATCAGCTTTGTGCTGGGTGAGGCTTCAGAAGGGGGGGGGGGT
TCAGCCTTTGGGCGGCAGGATGTGGGGATGGCGAGCAATTTGTAAAAAAATCGATCAAAT
GAATTAAAGAATGGTGCCGGCATTAGCCAAGACACTACTTTTGACTGACGTTCATCCATG
GTCGGGAACTGAAACAGAATCCACTGAAAAAGAGTGTAGTTTGCAAAAAGAGCAGACACT
GCATGAGTTTCAGATTGATTTTTTTTTATCAGTTGAGAATTCAAGCGACCAGTATAGTCT
CATTTACAAGAGTCACTTGGGGGGCATTAGTCGACCAGCAGGGGGCACCAATGGATGCTA
TGTATAATCCAAAAAGCGTAATTTTCGGGTCATTTTGAAAATGTGGACCCATCCATCGGC
ACACAATGGCCTGCTCTTGCGAATGACATTGCGTGATCTTTAACACCCACTGCGAGGCGG
ATGGCGCGCAGCATTATGGCTACAACCGCAGCAATAACCAGGGAGGCCGGCGGACTCGAA
CCGCACGCCTCCACAAGCGGCGAACGCGCTACCGCTGAGCCGAGTCACCTCCCCAGCAGC
CCGCGGGCGGGAGGCTCACCCAGTGTGTTTGTTCCTGATGATTTTCACGGTGACCACGCT
CTCTCCCTGGGAGGCAAATGCGTTCAGCACAAACGTCTCGTCCATGTATGGGTCCAG
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