SelenoDB
Release 2.0
Chart Advanced
Transcript Report for SPT00002456_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesSorex araneus (Shrew)
Transcript IDSPT00002456
Transcript release2.0
External IDNone
Gene SPG00002363_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00002456_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Shrew (Sorex araneus) # Full length # Forward
GCTGGCTACTGCTTTGTAGAATTCGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAA
ATTAATGGGAAACCCCTGCCAGGAGCCACACCTGTAAGGACATTCAGATAATGATGTTCC
CATTGTTATTGTCATTGATAACTATCATTTATTCCTACTGTGTGTTGATATTCTTTAATC
TTGTAACACCCTGAACAGTAGGCATTGTTGTCTTTGACAGACCAGGAAGCTGAAGCTCAG
GGAAGTGGAATAACTTGCCCAAGGCAACACAGGTAGTAAGTGGCAGAGCCAGGATGCCTA
CTGAAGATTGGTTGCCTCTTAAGTCCATGCCCTTTCCACTCTGCACCACTACCTCCCATT
ATGGAAGACTTGAAACTGTAGATCTCTTGCCTGATTGAGAAACTAGAACAGGCTGGCAGC
AGTGAGGCCACGATGCAAGAGAGTTACATTCTGCTCTTCCCACAGTTACTTAGCTTACAG
CTGCACCAAGCTGGCACACCTGGGCTCATAGAACCATGGAGCTGGCAGTGCCCTTAGCGG
TCATCCGTCAACCCCCTCATTTTATACAGGAGAAAGAGCTGAGGCTTAGAGAGGGGGAGA
TATATTGGCCAAGGTAATTTATTTCCGTTTTTTTCAAATATTGTTTGACTCTCGAAACAC
CTTTCTCTGTTTTAGTGTGTTTGTTTTTAAATTTTTAGGCCAAGCGTTTTAAATTGAACT
ATGCCACTTATGGAAAGCAGCCAGATAACAGGTAAGTACCAAATGTCCCCAAGTCAGCAT
CAGGCCCCAGGAAATGCCTTGGTAGAGACTGTCCCCCACCCCACCGTAGACCCTCTGGTC
TGCTTGTTTCTGTAGTCCCTTGTCTTCTCTATTTGTTTCCTCTCTCATCTTCCACTGTTA
CTCTTCATATTACTGAATTTTATTTCTTAAGAAATAGCCTGTGGGTGGGACTGGAGAAGT
TGTATAACAGGCACGGCATTTGCCTTGCACACAACTGACCTAGGTTCTATGATTCCCCCG
AACTCCGCCAGAGGTGATCCCTTAGCATAGCCAGGAGCAAGTTCTGAGCACCACCAAATG
TGGCACAAAATTTTTTTTAAAGGATAAAAAGGAAATAGATTGAAATGGGGACTAGAGAGT
TAGTGCAGCAAGTAGGGTACTTCCCTTACACCACATGGTCATCTGGGTTTGCTGCCCAGC
ACCCTGTAAGGTGCCCTGAGCCAGGAGTGATTCATTCCTGAGCACAGAGCCAGGAGTAAT
CCCTGAACACTAGGTGGAACTTAAAATCAAAAGTGGGGTTGAAGTGATAGTACAGCAGGT
AAGAGGCACTTGCCTTGCATGCAGCTGACCTGGGATCAATCCCTGGCATTTCATTTGGTC
ACCCAAGCACCTCACCTGCAGGAGTAATTTCTGAGTGCAGAGCCAGAAGTAAGCCCTGAT
AAGTTCATTCTTTCATTCTTTCTCTCTCTGTCTCCCCCACCACCCCTCTCTCCCTTTCTC
TTCTCCACTCTCCTCACTCTCCTCTCTCCCCCCTCTCTCTCCCATGGCTCAAGGGGTTAC
AGCACACAGACCTAGTTTTGATTCCCCAAACCTTATTATATAGTCCCCTAAAGCCACTAG
AGTGATCCCTGAGCATAGTCAATGTGACCCAAAAACAAAAAACAACCTGAGTGATAAAGA
GTGAGTAGGGTGCTTGCCTTACTTGTAGTCAACTTGGGTTCTATCCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGA
TTCTTTGTTCCATTAACAAAGATTTGTTATATTGTAGCAGCCTAGGGCCTGTCAAAATCT
TCAAAGTGAGAATTGGGGCCAGAGATAGGCTTCACAGCAAAGTGCACTGTTTTGTTTGTT
TTTGGACCACACTAAGAAGTGCTAAGGGTTACTCCTAACTGTGTGCTCCGGGATCCCGCT
GGGGGAGTCCAGAGGGTGCCAGGAGAACACAATGGGATGCCATAGATGGAACACAGGTCA
GCTATGTGCAATGCAAGCACCCTACTCACTGTACTCTCTTGCTGGTTCCCCCTCTTTTTA
TCTCTTAAGCACCTTTGACCTCTCCTCATGCATATTCCGTAACACTTAAAGTCAGACGAG
CTTTGTGCATTTGTGTATGTGCTGCCGAAGGGAACACAGCTTTGTGCATTTGTGGCAGGA
AACTCCTGTAACCCTTCTGCCCACATTTCCAAGTGAAACAAAATCTAAATTGGTCTACAA
AAATGGACCAAATAGAACAAAAGTTTTGGTTGTCTCTGAATCTTGGTCTTTCTTTTCAGC
CCTGAGTACTCCCTCTTTGTGGGGGACCTGACCCCAGATGTGGACGATGGCATGCTGTAT
GAGTTTTTCGTCAAAGTCTACCCCTCTTGTCGGGGCGGCAAGGTGGTTTTGGACCAGACG
GGCGTTTCAAAGTAAGATCTTCTCTGCTACCAATGCTTCCTCTCGTGCTTTCTGCGTTTT
CTTCTAGAGGGGTTTTTACAAAGAGGATGTGTAGCTTGGTGCTTGTGAACACAAGCCCTG
GAGCCCAGCTGCCTGCTTTGATGCTCAGCTCCAGCAGTAGCTGGGAGTGATGCCATTGGC
CAGTCTCGTGGCACTCAAGTCCCATGTCCTGTCCGTTGAACAGAGCAAGACAGATTGATG
GAAGATCGAGTTCCCCTTGGTCCCCTTTTATTTCCTATGATTTCAGTGATTTATGGTCAG
CCAAAGTTTGACAGTATCACATATGCTGTACTGGGGACTGGGAGATAATTCACCGGCTGT
GGAGCCTCTGTGCAAGATGTGAGTGAGTTCAGTCCCAGTGCCACCACACCTGCCAGGTGA
GATCCTGGTGGCTCTATCGTCTGTGGTCCCTGGTGAAGCACAGGTTCCCACTCTTCTGCA
GCCTGTGCAGAACAACGAAAGGGCATGTCTATGTCCCTCCCCTCATAACTGAGAAGATAT
ATGACTGTTCTTTTTCTTTCTTTTTTCTTTTTTTTTTTGGTTTTTGGGTCACATCTGGCA
ATGCACAGGGGTTACTCCTGGCTCATGCACTCAGGAATTACTCCTGGTCGTGCTCAGGGG
ACCATATGGGATGCTGGGAGTCAAACCTGGGTCAGCCACGTGCAAGGCAAATGCCCTACA
CATTGTGCTATCACTCCAGCCCCTATATGTGACTGTTCTGGCCAGGAATACAGCCCCCAG
CAAGCACATGTATGAACACCACAGGAAAGGAGCTCAGAGTCCCTCAATAAGGCATGTGCA
ACTCCCAGTCATCATAGCAACCTCAATAGGAAGAGACGGTGGGATAACAGAAAGAAGGGT
CCACAGAGATGCTACAGGCATTTACTTTCATGCAACTGACCTGAGTTCGATCCCTGACAC
CCCATATGATCTGAGCACAGACCCAGGAGTAAGCCGTGAGCATTGCTAGGTGTGTGCCCT
GCCCCCTACCCCCAACAAAGTCTTACATATGCTATAATAACATATAAGAGAAAGATCAGA
GAGCTCAATGGATGGATATAGCTGTGTGCAGGAGACCCAGGTCTGAATCACAGCATCATA
TGGTCAACTAATGGAGAGTAATGTCTAAATACCACCCAAAATTTAAGAAAAAATTAAGAG
AAATATAAGGTCTAGTGAGATAGTTCACTGTTAAGGTGCGTGTCTTCCCCCCACCCCCTT
TAGGCCACACCTGACAGTAGTTAGGGGTAACTTCAAGATCTGCACTCAGGAATTGCTCTT
GGCAGTACTGGAGGACCATATGGGATGCTGGGACTCAAACCCAGCTGACCACATGCAAGA
CAAACACTCCACCTGCTAGACTAGCGCTCTGGCCCCAGAGAAGCTTGTCTTGCATGCAGC
TGGCTCCAGTTTAATCCTCAGCACCCTCTGAACCTGCCAGGAGTCATCCCTGAGCCACCA
GGTGTGGCTCAAAAAATAAAACAGATTATTGTGCTTGCTTTGCATCTGACTATATCCTGG
CACCACATAATGGTTGCACAGCCCCCGAGCACTAGTGGGTGTTGAGGCACTCCACACACA
CACACAAACACAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGGCTCTTTGATGATTTGGGGTGGGACTGGCATGCGTGCCTATGCTCAGG
AGCAACCCCTGGCATTGTGTGTACTGGCGCTAATTTCAGCCAGTCAGCAGAATCTAACCT
TAACCCCTACTCTCAGCCCAGGCTCATTCTTCTTGCACGGTTGGGGATGGTTGGAAAACA
GCCTGCTCTGTGCTTGAGGATCACTCCCGGTGATAGACCCACAGGACTGCAATACCAGGG
GTCAAACCTCATTAGCCATATGCAGGGCAAGCCCAGCAGTGCTCAGGGCCTATTCCTGGC
TCTGCTGGGTGGGTGGGCTTTGGGAGGAGCAACCATATTCAGAGCCTGGGATCTAATCAT
CTAATCAGGGTCTGCCTCACAAGGCTCATTCTTTTTTTCTTTTTCCTTTTTTTTTTTTTT
TTTTTTTTTTTTGGTTTTTGGTTTTTGGTTTTTGAGTTACACTTGGTGATGCACAGGGGT
TACTCCTGGCTCTGCACTCAGGAATTACTCCTGGCAGTGCTCAGGGGTATGGGATGCTGG
GAATCAAACCCAGGTCGGCCGCATGCGAGGCAAATGCCCTACCTGCTATACTATTGCTCC
AGCCCACCAGGCTCATTCTTGATCCCAGGAGCAGCGCTAAGCTCTGGGCCCAGAAGAGTC
TGACAGGCCTGGACTGGGTCCTGCTTCCTCTATGGCTTAGAAGAGGTTCTTAAACCTCTG
AGTCTTGATTCTTTTAAGCAGAATGTGGATCCTTTCCCTCATCAGCTGGCTGGACTTCTT
AGTGAGGCAGCCCTTGGGAAGGCTTAGCACAGGGCCTTGGGAATAAGTGCTCCGCTGCCG
TTCATTTCTCCCCGAGTCTGCGCTGAGGGGAGCAGGAGCCTTGTCTGCATGTGACTCCCA
AGTGCCACCGCCTGCCTAGTGCAGTTGTGGCATACACACACCCTTGCTCTGAGTGAACGT
CTAGTATTGTTCTGCCCTTATTGTAAGGAGGAACATCAGGCACTTGCCATCGTGACTGAG
TATCAGGAGCAGCATTGCGTCTGGGTCCACTCAGGGAAGGTGTGGGGGAGAAAGGCAAGC
TAAGAGTTGGGACCCTGCCGTGCTCAGGGTCCTTCGTGCTTGATGCCTACATTGATCTGT
AACGGGCTCCCACCTGTGGGGTCTCCTCCCTCTCCCCCTCAAGCGATTGACACGCTCCCC
TGTTCAGCTCCTTATCTACCTGTGCACTGACACGTTCACACTTTGTGATCTAACTAGGGT
GTTCTCTCCAACAGAGGCTATGGATTCGTGAAGTTCACGGATGAGCTGGAACAGAAGCGA
GCCCTGACAGAGTGCCAGGGAGCAGTGGGGCTGGGGTCTAAGCCAGTGCGGCTGAGTGTG
GCCATCCCTAAAGCGTGAGTCTGGCTCTGGCCAGGGCAGTGGAGGGCTCTGGACTTACCC
TACACACTGGTCTCTCCCTGTTGCTAGGGTCAGGGCCCAGGCCCGTTGTTGAACTGTCAG
GCCAAGTGGACTGAGTGTAGCCAGCCATGGCCCCTAGGCGCCCCCCCTTGCCCCAAGTTA
TATGTCAAATTTGTACAGTAAGTTAAAGATGGCTGGGGACATAACTCAGCAATAGAGCAC
TTACTTACCTTGCATTTTCTTAGGTCCTGACACCACCACAAAAAAAAGAGAAATGATGTT
GAGGGGTTCCTCCTGGCTTTGCACTCAGTCAGGAATTACTCCTGGTGGTGCTCAGGGGAC
CATATGGGATGCTGGGGATTGAACCCGGGTCAGCTGCATGCAAGGCAAATAAATGCTCTA
CCCACTGTGCTATCGCTCCAGCCCCCTGTGTGTCACTTGTTAGGCTTGCGCCGAGTGGTG
GATATGAACAAATATAACTCCCCCAGGAGGGAGCTCTGAACTCTGTCAGCTGTACCTCAG
TTTTCTCATCTGTAAACTAGGAATAAAGGTGTCCTTATTGCATCGGGTTGTTAAGGAGAT
TATGAATCTGTGTAAGAGAACCTCAGGCCACGGAGAAAGTCATGGAAATGCATGCTTACA
AGAGTTTGTTTCCTATTGGTTCTTAACTTAAGGAGTCGTGTGAAGCCTATGGAATATAGT
CAGATGTACAGTTACAGCTACAATCAGTATTACCAGCAGTACCAGAACTACTATGCCCAG
TGGGGTTACGACCAGAACACAGGCAGCTACAGCTACAGCTACCCCCAGTACGGCTACACC
CAGAGCACCATGCAGGTAACCGTGACTGGGCAGATCTGGCTCTCCTGGGCACTAACGTAA
CGTTCTCTAGGTTGGGGTTGGTAAGGAAGGGAGCGTGGGCTTCAGAGGGATAGAGTTAGC
TGTGCAGTTCAGAAACCTTAATCTTCCTTACCCTGTATCTTCGTTGTGTTGCTCACTGTC
TTCTGGTCTGTTGGCAGACATATGAAGAAGTTGGAGATGATGCATTGGAAGGTAAGAAAG
GAATTCTCTTTTAAGGGCTAGGGCTCGAAGGGCTGGAGTACATACTTTGTATATGGGAGC
CTCGTGTTTGATCCCCAGTCATCCACTGCTTGGTGTGACTGTGGCCCAGAAACCACAAAA
AGGAGTCCATATACTCATTCTTCCATCCAGAGTCCAGGGAAAGCAGCTCCATAAAGCCCC
CTCCCCCGCCCCCAAACAGACTTTCCCTAACCCTCAATTTAGGCTCTAGCAGAAGTACTT
GCTTGACAACTGGAAAATCAGCTTTCTCTTTCTAGTTCTCAATTTTTTTGTATGTATTTT
AAGTGACATTTCTTAAAATGACTTATGTATTTTAAGAAACATGGGGTTTTCTTTGTTTTG
GGGCTACACCCGACAGTGCTGGACTGTTTTCTGGAGAAGAGCCATGCTGTTCATGCTCTG
CCTGATTGTTAGTCCCTCCTCATATTATCCTAAGGATCCCCCTTAGTAGTTCTGGGAGTC
CAATCCAGATGCAAGGCATGTGTTCTATCATTTGAGCTACATTCCCGACCCATCTTGAAA
TTTTGAGCATTTAAAGGAATGATACCTGGGGCTGGAGCGATAGCACAGCGGGTTGGGCGT
TTGTGGCCAACCTGGGTTCGAATCCCAGCATCCCATATGGTCCCCTGAGCACTGCCAGGA
GTAATTCCCCTGAGTGTAGAACCAGGAGTAACCCCTGTGCATCGCTGGGTGTGACCCGAA
AAAGCAAAAAAAATAATAATAATAATAATAAAGGAATGATACCTGAGTTCAAAGTGAAAA
CAACACTCCCCCACAAAAAAAAAAAAAATATATATATATATATATAGGGCCAGACAGTTC
AGTAGGTGGTACATTTGTTACATGTAGGAGACCTGGGTTCAGCCCTTCAGTTTCTGTGAC
CAGCAACCCCTAGCACAGAGCCAGAAGTAGCCTCTGAGCACTGCTGGGTTTGATCCCCCA
AAACAAAAATAAACCAAAGCAAGAGCACTCTGCTCAGTGTGGAGTTCAGTTTATAAGAAC
AGAACTATTGGAGCTGGAATGGGGAGGGCGTTTGCCTTGCATGCTGCTGAACTGGATTCA
GTTGCCAGCATCCCATATGGTCCCCTGATCGCGGTCAGGAGTAACCCCTGAGCATTACTT
TGTGTGACCTAAGAAACCTTGAAAAAAAAAAACCCTCTTCACTCTGCTATGTAATAGTGT
GTTATGTAGTATTAAGAAGTTTATTCTGTGGCTGGGGAGATGGCTTATTGGTAGAGTGCT
TGCCTTGCATGTGTTATGGCCCTGGGTTTGATCCCCAGTACTATGAAAATATTTTTATAT
CCCATATGGTTTCTTGAGCACCAAGAGTAATTCCTTAGTGCAGAGCCAGGAGTGAAATGG
CCCTGAGCATTGCGGGGTGTGGCCCCCTTTGTTTTCTGGAAAATACACTCATGCGTCAAG
ATACTCATTTTTGAGATGAATTGTAGTACTGTGGGTAAGGCCTTGCAAGCCTCCAGTCAG
AGTTCAATCCCCAGCACCCTCTGTGGTCCCTCGAGTGCTTCCAGGAGGAACCCCTGAGCA
TTGGTCAAAAATAAATAAATAAATAAAGGAACTTTGCCATGCTAATGCATAGCATGTGAT
GGCTCAGAGACCCAGTGGCAGTGCTTACTGAAGTACCAGCCTCTGGACACTACCTATCCC
ATGCTCGTGTCACAACCCCACTTCACCCTCACTGGGATCTTGTGGGGAGTAGGAACCCTT
TGAAAGACAGGGAGACAACAGGAAGTCTTGCTAAGTGCTTTTTGTGAACCATCCAAAGCT
GTCTTTCTCTTCCAGACCCTACGCCACAGCTGGACGTGACTGAGGCCAACAAGGAATTCA
TGGAGCAAAGTGAGGAGCTATATGATGCACTGATGGACTGTCATTGGCAGCCACTGGACA
CAGTCTCTTCAGAAATCCCTGCCATGATG
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