SelenoDB
Release 2.0
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Transcript Report for SPT00003118_2.0
Identity
TranscriptSelenoprotein R (SelR)
SpeciesNeotoma lepida (Desert woodrat)
Transcript IDSPT00003118
Transcript release2.0
External IDNone
Gene SPG00002996_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00003118_2.0 # Transcript # Selenoprotein R  (SelR) # Desert woodrat (Neotoma lepida) # Full length # Forward
ATGTCGTTCTGCAGCTTCTTCGGAGGCGAGGTTTTCCAGAATCACTTCGAGCCAGGTACA
GCCTGTGGCATTAAAGCAGGCATCGCCTTCTGGATGGTGGTGGAGTCCCTGAGCCTGGGA
CTGGGATGACCCCAGCCCAGGATGGGGTGACCGTGGCTGCTGAGGAGAAGCGAGCTTGGG
AAAGAGAACTCGGAGGAGGGGCTGGCGACGGCATTGGGGAGCAGGAGGACTTGAGAGGAG
AGGGGGCATTCCTGTAATCTCTGTTCTCGAGGAGGACAGGCCTTGAACTTCAGTGTAGAT
CTCTCTAGGGATCCTCTGGGCCGAGTGCTTTGGGGTGGTACCAGAGTGGTCGGAACTTTG
GAGCGGAACGATGGGGATATGTGATCCAAGGTCCGTGTTGGAGTTTGCCCTGATTGTGTT
CCTTTCCAGACTGACTTGGATGAGTGGACAAGCTCTGCACTTTGCGTTCAGTTCCGAATA
TGCCGGCCCAAGTGTTTCCCTGTCCTCTCAGTTAGGTGTCAGTGGGCTCTTACCAGTGTC
AGTGAAGTGTAACCATTGGTGCAGTAGCCCCAGGCTGTTAGAGACTCTAGTGAGTCCCCT
TCTTGCTGGGTTCTGCTGATATTGGACTAATTTGGTAAAACTATGGCATTGGCGTTCCTG
GGGCGGGATCTGTTAGATGTCAGTCCTCCGGCGGGCTGAGCTGTGACACTGGGCATCTGT
ATAAGCCAGTTGTAATACAGGGTCACTGGGCAGAGGCCTCTCTTGAATCCCTCTTGGTTG
CCTTCAGGCTGCCCTGGCAAGCTGGACGTTTCACTATGTTTTGCTTCCTCTCCAGTTCCT
GATACAGACTGAACAGTTCACACTCCTCAAGTGGTGGGTGATGGGTGATTCAGTACCTGT
CAAGTTCCTATTTTTTAGTCTTTCAAACAGTTATGCAATTCAGTTTTGCAACCTTATTTA
TTCCTTCACTCATGTGGTCTTTTGGCGACAGGTTGAAACCTTCCTTCCCGGCAGTTGTTT
TTCTAGGGTTCCCTGTTTGGCTTGGAAGACAGTTCCCTAGGACCAGTCTACTCTTCCTCA
GAGATCAGGCCTGTGGCTGGGTATCCAGTTTAAAACTTTGTTGAGGGCTGGAGAGGTGGC
TCAGAGGTTAAGAGCACGGATTGTTCTTGCAGAGGTCCTGAGTTCAATTCCCAGCAACCA
TATGGTGGCTCACAATCATCTGTAATGAGATAATGAGATCTGGCGCCCTCTTCTGTATAC
ACAATAAATAAATCTTTTTATTATTATTATTATTAAAACATTCGATGTACAACTGGAGGA
GAGATAATATACAGATATCTTGAACATAAATAGAGGTACAAATTCTTATCCTAATAGTGA
AATGTTTCACTAAAGCATGCCCAGTGATCGGGCAAAACCAAAACTTAATTTATGCTACAG
TCATCCTAGGGTCCTTCCTGCTAGGTAGCCTCCCTGGATCTGTGGGTTGCAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTTGTTGAGTGGCAGAGATGCCTACTTGAG
GAGAGAGGGGACCAAATGGTTGCACTGGCAGTGTTAGGGGCCCTGCTGTGTGGATCTTGT
CCAGGGATAAAGGAAGGCTAAAATCAGATATTCAGGGTTTTCTCTTGGCTACATACCTTA
TCATGTGTCTGCAACACCAACCTTCCCCTTCTTGCTCATAAATGGAAATGTTAGCCAAGT
ATGGTTCACACCTGTAATCCAGGGTAGAGAGGCTCAGGCAGAAGCATTGCCTTAAATTTG
AGGCCAGCCTGGATTACATAGTTGCAGGCTAGCCTGGGCTACAGTGTGAGACTTGTCCTA
GTTTGTTTCTCTGTTGTGAAAGAACACTGACCAAAACCTGTCTGAGGAGGAAAGAGTTTA
TTTCAGCTTACAAGCTATGGTCCATCATCGAGGGAAGCCAAGGTAGGAACCTGGAAGCAG
GAACTGAGTAGAGACCACAAAGAAATGCTGTTTACTGGTTTGCTACCCTAGCTTGCTCAG
CTACTTTCCTTCCTTCCTTTTTTTTTCCCCTCCCGAGACAGGCTTTCTCTGTAACAGCCT
TGGCTATCCTGGAACTCACTCAGTAGCCCAGGCTGGCCTTGAACTCACATAGATTCCCTG
CCGCTGCCTCTCGAGTGCTGGGATTAAAGGCATGTGCCATCACCACCTGGCTCAGATACC
TTTCTTTTTCTTTTTAAAAATATTTTTTTAACTTTATTTTTATGTGTATTGGTGTGAAGG
TGTCAGATCACCTGGAATTGGAGTTATAGACAGTTTTGAGCTGCCATATGGGGGCTGGGA
ATTGAACCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACTACTGAGCCATCTCTCCA
GCCCCATCTCAGCTACCTTTCTAATACAGCCTAGACCCACTTGCTTAGGGATGGCACCGC
CCACAGTGAGCTGGGCCCTCCCACCTCAATCATTAATCAGGAAAATGTCCCCGTAGACAT
ACATGCCCACAGACCAGTTTGATCCAGGTAAGTCCTCAGCTGGAGTCCCTCTTCCTGGGT
AACTCTAATTGTTTCAAGCTGACAGAAACTAACTGGCACAAGATGTGACAGAAACTAACT
GGCACAAGATGTCTCAAAACAAACAAAACAAAACCCCCAAGGGGGCTGGAAATGGCTCAG
TGTTAAAAACCTGCCTTCCCAGAGGACCTGGCTTTCATTCTCACCACTCCAGTCTCAGGG
AATCTGACCCTTTCTTCTGGTCTCTTCTGGTTTCTGTGCGCACTGCACACATGTGGTACA
CAGACACACATTCAGGCAAAACACCCATACACATAAAGTAAAAGTCTTTTAAGACACCCA
AAACTAAATAATTAAATTAAAATGTTCAAGATTTCCTATCACAGGGCCACTGAGAGTAGC
GGAAATGAGCCCAATGAGTGACTTCTGGCCCCTTGTAACTGAGCCAGGCATTGCTAGGTC
TCCCAGAGCCAATCAATGGGCTGTGAGCAGGGGATGTATGGGGATGGTGTGTGGTCTCCT
GTCACAATGGGGGCAGTGCTAGTGTTGTCATTTCCCGGGTCCAAGGTCAAGGAAACTTAT
ACCAGACAGATGCAGCTGATGAATGTCTCTGCTTTTGTTCTTCCTGTGCTACAGGTGTCT
ATGTGTGTGCCAAGTGTGGCTACGAGTTGTTCTCCAGCCACTCAAAGTATGCACACTCTT
CCCCGTGGCCAGCATTCACTGAAACCATCCATGCAGACAGTGTCACCAAGCGCCCTGAGA
AAAACCGACCTGAAGCTTTAAAGGTGGGTGTGATAGCCCCCGTGAGTGCTGGCCAGGGAG
GGTCTTGGGACTGGTTACACTTGTCTTCCTTTGCTCCCTCATGAGGTTGTTCCAGGTCTC
CACCTTAAGCTGGGGTGCTGGCACCCCAAGATTTGTTGTTGTTGTTTAAGACACTATTTC
TCTGTGTAGCCCTGGCTGTACTGAAACTCTGTAGAGCAGGCTGGCTTCGAATTCAGAGAT
CCACCTGCCTCTGCCTCCTGAGTGCTGGGACTAAAGGTGTGAGTCACCACACCTGGATTT
TGAGAGTGCTTGTATTCTGAGAGAACATGAGCGTTAGGATAGCTTCCCTGCACAGGCCCC
ACCCCTCAGAACTATAGTTAGCTTGGGAAATAGGCAGATGGTGGAAGCATTACTTATCTG
CAGCAGGCAGGGTGACTATGTTTGGGTTTTTCCAGGTGTCCTGTGGCAAGTGTGGCAATG
GGTTGGGCCACGAGTTCCTGAATGATGGCCCCAAGCGGGGACAATCCCGATTCTGAATAT
TCAGCAGCTCATTGAAGTTCATCCCTAAAGGTGAGCACCTTTTGCAGCTGGGGACATCCT
GTTGTAACTGAGGGAAATGCAGCAGGGAGGGCACACTGTGTATGCTTTGTGTGTGGCAAA
ATGCACCTACCAATGGCACCTCAAAAGCTGGCCGAGGGACAGGTCTAGGGGGCAAATGTC
CAGGGTATCTTATATGGGAACATCTCAGGGAGGGCGTGGCATGTGGTTTTCTCTGTAGAC
CTGGCCTTTCCATGTGCCTGGAATCTTCGGTTGGATGTAGGGGTGGGTGAAGGCTGAAGA
CCTGGGCCATGTGACCAAAGGCTTGCTTCTGAACCTGAGTGTCTGTCTTTCCTCTGCATA
GTGGCCATGGTAACATATTTTCTATCACAGGGCTGCTGAATGTGATATGGTACCCCTGGG
GCCTTGCACATAGCAACAACTCAATAAAACTGCTGCTCCTTTATCAACCTTTTCAATAGT
GGGCAAGGGCTGTAGTCAGACTGAATAAAGATTCAGTTTCTTAGTTGCAAAATGGAGCTG
TCAAGTAACAGCTACCATTGCTTTACTGTGGGGTTAGTGAGCAGTCTGGAAGGGCCTGGG
GCACACTGAGCTAGGGCGATATTTGTGTCCTGTCATCCTCTTTTCTTCTCTGTGTCTGGT
GAAGGAAGAAGAGACTGTGGGTTCTCCTGTAGATCTCAGGAAATGAACAGTGTGCAGACT
TCCTTGAGCTGGTTCCTGGGGCCCTTCAGCTGGCCTGGAGTCTGAATCATGATTTTTGTT
CTTTGGTTTTAGTACTTTTCAGAAAAAGTATATTTTTCTCCATTCATTCATTCATTCATT
CATTCATTCATTCATTCATTCATTTATTTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTG
GCTATCCAAGAACTTGCTGTGTAGACCAGGCTGGCCTCAAACTCTGAGATCAGAGATCCG
CCTGCCTTTGCTTCCCGAGTGCTGGGATTAAAGGCGTGTGCCAGCACCGCCTAGCTCTCT
GTTTATTTTTATATTATGTGTTTGGGCGTTTTGCCTGAATGTATTTCTGTGAACCACATG
TGTGAAGTGCCCGAGGAGCCAGAAGAGGGCATCTGATCCCTGGGACTGGAGTTAAAGTTG
GTGTTAGCCTGGTGGGTGCTGGGGATGGACCCTGGTCCTCTGGAAGAGCAGTCCATCTCT
CCAGCCCCCTGCCAAAAATACATTTTAATTTATTTACTTAGTTTATTTGTGGGTGTGTAC
ATACCACTGCATGTGTGGGGGTCAGAGGACAGTTTATGAGAATTGGTTCTAAGTCTTCCA
CTTTCAACCTGGGTATCAAATTCAGGTTGTTAGGCTTGGTTGGCAAGTGCTTTTACTCAT
TGGACTATCTCACTATCCCTGGCTTTAGTTGTTTTTTTTNAAGACAGAGTCTTGCTTTAT
TGCCCTGTCAATCCTTGAACTCATAGAGATCTACTGCCTGAGTCTCCTAATAGGTTTTAG
TATTTTTGAGATAGAGTGTCCACTGTGGCCCAGAGTNGCCTAGAACTTACCATACAGCCC
CTCCTGATCGAGCCTCCTGAACCTCCTGCCTCAGCCTCTGGAATGTGAGACTTGCAGATA
GGAGCCATCACGCCCAGATGAAGCATGAATTAATGATGTGTTTTCTCTTCTCTCTTTTCC
AGGCAGAGAAGCTCCTGCCTCCCAGGGGCACTAGGTGAGCAGCTCTCCTTCCCAGATGGG
TATGCCCACTTTCTGGCAGCCCCACTTTAGTGTCGGAACCCTGGACATTCAGACTGGGGG
GCTGGGAGGAGGTGGTTAAAGCATCAGGAAGCTCCCAACGCCTTGTCTCTAAATGGAATC
GCCTTAGATGAAGCACTTTTTGGAAAGTCTCTACTGTTCTACGGTGATGACCCTGGGGAC
GGTGCTAAGCCGTTGGCTGTTTTGAGTCTGTAGGAGACTCTGGAATTAGCTCATCTTTGA
ATGACATTGTACCCAAACCCTCTCTTCCCCTCATCCTGCTACCCACCTCCTTGGCTGTCC
ACACTCACCCTTATGGGGCTCTGTCTGGGGGGGGGCCCTGGCCCTCATTAAAGCTTCTGC
CTATCTCCTCTAGGCTGTGCAAGAGATGGAATGACACTGGGGCTGCCCTGGCCAGCTACT
CCAGCCTTGGTCACTGCATGATCTGCTCTGGTTAAATCCTAAGCCAGCCAGGGTGGTGAT
GATCTGTGACCTTC
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