SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000282_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

A (G in the Reference genome)

State

Derived (G in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Maya	America	20	0.025

Balochi	Central-South Asia	23	0.043
Makrani	Central-South Asia	21	0.024
Pathan	Central-South Asia	21	0.048
Sindhi	Central-South Asia	12	0.042

Adygei	Europe	14	0.036
French	Europe	25	0.020

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.002	0.009	0.005
Central-South Asia	0.006	0.022	0.009	0.013
East Asia	0.000	0.000	0.001	0.005	0.000
Oceania	0.000	0.000	0.002	0.007	0.000	0.000
America	0.001	0.007	0.003	0.005	0.001	0.001	0.002

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	0.997	0.903
Central-South Asia	1.000	0.107	0.387	0.047
East Asia	1.000	1.000	1.000	0.999	1.000
Oceania	1.000	1.000	1.000	0.622	1.000	0.999
America	1.000	0.983	1.000	0.979	1.000	0.963	0.548

Low P-value

High P-value

VariantID

SNP00000282

Variant release

2.0

External ID

rs114634030 (dbSNP)

Sequence

SEQ00000004_2.0

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