SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000287_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

T (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	23	0.022
Yoruba	Africa	22	0.091

Tu	East Asia	9	0.056

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.188
Middle East	0.017	0.000
Europe	0.010	0.000	0.000
Central-South Asia	0.011	0.000	0.000	0.000
East Asia	0.048	0.058	0.056	0.057	0.085
Oceania	0.009	0.000	0.000	0.000	0.056	0.000
America	0.007	0.000	0.000	0.000	0.002	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.826
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	0.997	1.000	1.000	1.000	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000287

Variant release

2.0

External ID

rs79051184 (dbSNP)

Sequence

SEQ00000004_2.0

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