SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000295_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

A (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	23	0.087
Mandenka	Africa	16	0.062
N_Bantu	Africa	11	0.045
SE_Bantu	Africa	5	0.100
Yoruba	Africa	22	0.136

Makrani	Central-South Asia	23	0.022

Mozabite	Middle East	29	0.017

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.022
Middle East	0.085	0.007
Europe	0.055	0.001	0.000
Central-South Asia	0.056	0.003	0.001	0.002
East Asia	0.040	0.000	0.000	0.000	0.000
Oceania	0.050	0.000	0.000	0.000	0.000	0.000
America	0.040	0.000	0.000	0.000	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.278
Middle East	0.044	0.469
Europe	0.014	1.000	1.000
Central-South Asia	0.009	1.000	1.000	1.000
East Asia	0.001	1.000	1.000	1.000	1.000
Oceania	0.130	1.000	1.000	1.000	1.000	0.999
America	0.053	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000295

Variant release

2.0

External ID

rs8179172 (dbSNP)

Sequence

SEQ00000004_2.0

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