SelenoDB
Release 2.0
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Variant Report for SNP00000296_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantT (G in the Reference genome)
State Derived (G in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Pima America 14 0.036
Brahui Central-South Asia 18 0.028
Burusho Central-South Asia 16 0.062
Hazara Central-South Asia 17 0.029
Kalash Central-South Asia 14 0.107
Pathan Central-South Asia 14 0.071
Sindhi Central-South Asia 10 0.050
Uygur Central-South Asia 6 0.083
Japanese East Asia 12 0.042
Mongola East Asia 8 0.125
Naxi East Asia 3 0.167
Yakut East Asia 15 0.100
Basque Europe 15 0.067
Bergamo Europe 6 0.083
French Europe 21 0.024
Orcadian Europe 13 0.038
Sardinian Europe 20 0.025
Tuscan Europe 6 0.083
Druze Middle East 29 0.017
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.000
Middle East0.2440.168
Europe0.6760.3660.327
Central-South Asia0.6950.3560.2650.281
East Asia0.2190.1830.0810.0790.233
Oceania0.0000.0000.0270.0390.1770.000
America0.1910.1470.0680.0690.1600.1930.287

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa1.000
Middle East0.5980.190
Europe0.0000.0000.000
Central-South Asia0.0000.0000.0000.000
East Asia0.3100.3260.0240.0000.001
Oceania1.0000.9990.0210.0050.6290.999
America0.1380.4730.0600.0010.0030.1970.004

Low P-value

High P-value

VariantIDSNP00000296
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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