SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000297_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Ancestral (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Pathan	Central-South Asia	16	0.031

Tujia	East Asia	8	0.062
Xibo	East Asia	6	0.083

Sardinian	Europe	21	0.048

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.002	0.007	0.007
Central-South Asia	0.001	0.004	0.004	0.003
East Asia	0.010	0.031	0.016	0.015	0.022
Oceania	0.000	0.000	0.003	0.001	0.014	0.000
America	0.000	0.000	0.002	0.001	0.011	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	0.903
Central-South Asia	1.000	1.000	1.000	0.995
East Asia	1.000	0.996	0.997	1.000	0.232
Oceania	1.000	1.000	1.000	1.000	0.997	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000297

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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