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Release 2.0
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Variant Report for SNP00000298_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantA (T in the Reference genome)
State Derived (T in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 13 0.077
Mandenka Africa 15 0.033
San Africa 5 0.100
SE_Bantu Africa 4 0.250
Yoruba Africa 18 0.028
Maya America 16 0.125
Balochi Central-South Asia 14 0.036
Brahui Central-South Asia 12 0.042
Hazara Central-South Asia 10 0.100
Makrani Central-South Asia 17 0.118
Uygur Central-South Asia 4 0.250
Dai East Asia 3 0.167
Daur East Asia 5 0.400
Han East Asia 25 0.220
Japanese East Asia 14 0.143
Lahu East Asia 2 0.250
Miaozu East Asia 8 0.062
Mongola East Asia 3 0.167
Naxi East Asia 6 0.167
Oroqen East Asia 3 0.167
She East Asia 4 0.125
Tu East Asia 6 0.083
Xibo East Asia 7 0.286
Yakut East Asia 14 0.107
Adygei Europe 12 0.042
Basque Europe 15 0.200
Bergamo Europe 3 0.167
French Europe 17 0.206
Orcadian Europe 13 0.115
Russian Europe 14 0.036
Sardinian Europe 18 0.111
Bedouin Middle East 24 0.062
Druze Middle East 13 0.154
Mozabite Middle East 18 0.083
Palestinian Middle East 36 0.083
Melanesian Oceania 9 0.167
Papuan Oceania 6 0.083
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.061
Middle East0.0240.000
Europe0.0430.0200.035
Central-South Asia0.0300.0020.0300.016
East Asia0.0590.0390.0370.0470.047
Oceania0.0570.0270.0240.0480.019N/A
America0.0480.0200.0440.0250.0660.0710.081

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.020
Middle East0.6971.000
Europe0.0600.1370.000
Central-South Asia0.6510.9270.0090.144
East Asia0.0150.0440.0250.0450.000
Oceania0.0730.0370.5580.1150.491N/A
America0.0560.0900.0030.0240.0120.2300.039

Low P-value

High P-value

VariantIDSNP00000298
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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