SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000300_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Cambodian	East Asia	5	0.100
Dai	East Asia	7	0.071
Daur	East Asia	6	0.083
Han	East Asia	25	0.040
Lahu	East Asia	4	0.125
Tu	East Asia	8	0.062
Xibo	East Asia	7	0.071

Basque	Europe	19	0.026

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.001	0.004	0.003
Central-South Asia	0.000	0.000	0.002	0.000
East Asia	0.017	0.049	0.023	0.027	0.021
Oceania	0.000	0.000	0.001	0.000	0.021	0.000
America	0.000	0.000	0.001	0.000	0.015	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	0.993
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	0.690	0.966	0.911	0.011
Oceania	1.000	1.000	1.000	1.000	0.910	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000300

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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