SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000301_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Sindhi	Central-South Asia	14	0.036
Uygur	Central-South Asia	8	0.062

Daur	East Asia	5	0.100
Han	East Asia	23	0.065
Oroqen	East Asia	4	0.125
Tu	East Asia	8	0.062
Yakut	East Asia	21	0.024

Melanesian	Oceania	11	0.045

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.000	0.000	0.000
Central-South Asia	0.211	0.217	0.198	0.375
East Asia	0.235	0.241	0.237	0.189	0.207
Oceania	0.475	0.488	0.480	0.378	0.163	0.020
America	0.000	0.000	0.000	0.006	0.006	0.010	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	0.735	0.620	0.686	0.000
East Asia	0.285	0.290	0.290	0.018	0.000
Oceania	0.000	0.000	0.000	0.000	0.016	0.108
America	1.000	1.000	1.000	1.000	1.000	0.836	1.000

Low P-value

High P-value

VariantID

SNP00000301

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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