SelenoDB
Release 2.0
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Variant Report for SNP00000303_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantT (G in the Reference genome)
State Derived (G in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 17 0.029
N_Bantu Africa 10 0.050
San Africa 4 0.125
Karitiana America 10 0.100
Pima America 11 0.091
Balochi Central-South Asia 20 0.025
Hazara Central-South Asia 16 0.031
Makrani Central-South Asia 20 0.050
Dai East Asia 6 0.167
Daur East Asia 7 0.214
Han East Asia 25 0.180
Japanese East Asia 20 0.100
Naxi East Asia 7 0.143
She East Asia 5 0.100
Tu East Asia 8 0.062
Yakut East Asia 21 0.048
Adygei Europe 13 0.077
Basque Europe 17 0.029
Bergamo Europe 9 0.056
French Europe 20 0.025
Russian Europe 19 0.026
Sardinian Europe 17 0.029
Tuscan Europe 7 0.071
Bedouin Middle East 29 0.017
Druze Middle East 28 0.054
Mozabite Middle East 22 0.068
Palestinian Middle East 39 0.026
Melanesian Oceania 11 0.045
Papuan Oceania 14 0.071
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.155
Middle East0.5960.009
Europe0.5270.0360.108
Central-South Asia0.2490.2420.2810.176
East Asia0.3040.0440.0870.3140.219
Oceania0.5830.0060.1190.5930.2290.000
America0.3870.0250.0950.3910.2990.0150.341

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.089
Middle East0.0000.188
Europe0.0000.8160.046
Central-South Asia0.0050.0000.0000.015
East Asia0.0000.0000.0000.0000.000
Oceania0.0000.7150.3870.0000.0000.999
America0.0000.0140.0000.0000.0000.6420.008

Low P-value

High P-value

VariantIDSNP00000303
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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