SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000305_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Burusho	Central-South Asia	21	0.024

Daur	East Asia	7	0.071
Han	East Asia	25	0.080
Japanese	East Asia	22	0.023
Naxi	East Asia	6	0.083
Tu	East Asia	9	0.056

Palestinian	Middle East	43	0.012

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.002
Europe	0.000	0.000	0.000
Central-South Asia	0.000	0.002	0.001	0.002
East Asia	0.013	0.030	0.020	0.019	0.015
Oceania	0.000	0.000	0.000	0.000	0.015	0.000
America	0.000	0.000	0.000	0.000	0.011	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	0.654
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	0.995	1.000	1.000	0.147
Oceania	1.000	1.000	1.000	1.000	0.990	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000305

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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