SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000306_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Daur	East Asia	6	0.083
Han	East Asia	27	0.056
Tu	East Asia	10	0.050

Melanesian	Oceania	13	0.038

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.000	0.000	0.000
Central-South Asia	0.000	0.000	0.000	0.000
East Asia	0.008	0.023	0.012	0.013	0.012
Oceania	0.008	0.030	0.013	0.015	0.010	0.026
America	0.000	0.000	0.000	0.000	0.007	0.007	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	0.951
Oceania	0.977	0.188	0.283	0.284	0.782	0.093
America	1.000	1.000	1.000	1.000	1.000	0.857	1.000

Low P-value

High P-value

VariantID

SNP00000306

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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