SelenoDB
Release 2.0
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Variant Report for SNP00000307_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantC (T in the Reference genome)
State Derived (T in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 21 0.024
Burusho Central-South Asia 20 0.025
Hazara Central-South Asia 20 0.025
Kalash Central-South Asia 15 0.067
Makrani Central-South Asia 21 0.024
Sindhi Central-South Asia 9 0.056
Uygur Central-South Asia 9 0.056
Dai East Asia 6 0.083
Han East Asia 25 0.120
Hezhen East Asia 4 0.125
Japanese East Asia 20 0.050
Naxi East Asia 7 0.071
Oroqen East Asia 4 0.125
She East Asia 5 0.100
Yakut East Asia 18 0.028
Basque Europe 19 0.026
Tuscan Europe 8 0.062
Druze Middle East 36 0.028
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.001
Middle East0.0030.011
Europe0.0060.0180.017
Central-South Asia0.0080.0280.0170.017
East Asia0.0150.0380.0230.0170.018
Oceania0.0010.0020.0090.0140.0230.000
America0.0000.0010.0060.0100.0170.0000.000

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa1.000
Middle East1.0000.289
Europe1.0000.7220.229
Central-South Asia0.9900.0150.0100.013
East Asia1.0000.5920.8360.6180.002
Oceania1.0000.9470.9850.1390.7270.999
America1.0001.0001.0000.5890.9321.0001.000

Low P-value

High P-value

VariantIDSNP00000307
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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