SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000308_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Maya	America	19	0.026

Uygur	Central-South Asia	9	0.056

Japanese	East Asia	26	0.038
Naxi	East Asia	8	0.062

French	Europe	26	0.019
Sardinian	Europe	26	0.019

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.001	0.004	0.001
Central-South Asia	0.004	0.013	0.006	0.015
East Asia	0.004	0.011	0.004	0.009	0.005
Oceania	0.000	0.000	0.000	0.006	0.005	0.000
America	0.001	0.006	0.001	0.005	0.003	0.002	0.001

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	0.999	0.995
Central-South Asia	1.000	1.000	0.997	0.971
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	1.000	1.000	0.996	1.000	1.000	0.999
America	1.000	0.999	1.000	1.000	1.000	0.991	0.962

Low P-value

High P-value

VariantID

SNP00000308

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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