SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000309_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	21	0.024

Surui	America	7	0.071

Kalash	Central-South Asia	17	0.059
Uygur	Central-South Asia	7	0.071

Han	East Asia	31	0.065
Hezhen	East Asia	7	0.071
Japanese	East Asia	22	0.045
Lahu	East Asia	5	0.100
Naxi	East Asia	7	0.071
Tu	East Asia	9	0.167
Tujia	East Asia	9	0.056
Yizu	East Asia	9	0.056

Tuscan	Europe	8	0.062

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.001
Middle East	0.003	0.000
Europe	0.103	0.122	0.239
Central-South Asia	0.181	0.166	0.228	0.295
East Asia	0.403	0.481	0.414	0.371	0.260
Oceania	0.001	0.000	0.007	0.013	0.222	0.000
America	0.205	0.243	0.215	0.196	0.148	0.237	0.476

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	0.987	0.952	0.051
Central-South Asia	0.437	0.713	0.007	0.000
East Asia	0.000	0.000	0.000	0.000	0.000
Oceania	1.000	1.000	1.000	0.991	0.001	0.999
America	0.017	0.042	0.000	0.001	0.000	0.156	0.007

Low P-value

High P-value

VariantID

SNP00000309

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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