SelenoDB: selenoproteins database

SelenoDB

Release 2.0

Chart

Variant Report for SNP00000315_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

T (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Burusho	Central-South Asia	23	0.022
Kalash	Central-South Asia	20	0.025

Adygei	Europe	16	0.031

Druze	Middle East	40	0.050
Palestinian	Middle East	45	0.011

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.476	0.497
Europe	0.120	0.160	0.005
Central-South Asia	0.215	0.221	0.044	0.138
East Asia	0.000	0.005	0.001	0.001	0.000
Oceania	0.000	0.006	0.002	0.001	0.000	0.000
America	0.000	0.004	0.001	0.001	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	0.000	0.001
Europe	1.000	0.003	0.995
Central-South Asia	0.103	0.002	0.056	0.107
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	1.000	0.915	1.000	0.999	1.000	0.999
America	1.000	0.998	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000315

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

Chart

Search Species for Family

Advanced

© 2007-2024 SelenoDB
- A public source of selenium -