SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000317_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

C (T in the Reference genome)

State

Derived (T in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Mandenka	Africa	16	0.062
Mbuti	Africa	13	0.038
N_Bantu	Africa	11	0.045
SE_Bantu	Africa	5	0.200
Yoruba	Africa	22	0.045

Balochi	Central-South Asia	23	0.022
Kalash	Central-South Asia	20	0.125

Tu	East Asia	8	0.062

Bedouin	Middle East	45	0.022

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.045
Middle East	0.082	0.007
Europe	0.061	0.001	0.000
Central-South Asia	0.057	0.019	0.013	0.025
East Asia	0.039	0.007	0.004	0.012	0.005
Oceania	0.055	0.001	0.000	0.011	0.004	0.000
America	0.042	0.001	0.000	0.009	0.003	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.317
Middle East	0.177	0.350
Europe	0.034	1.000	1.000
Central-South Asia	0.040	0.866	1.000	0.435
East Asia	0.096	1.000	1.000	1.000	1.000
Oceania	0.162	0.967	1.000	0.996	1.000	0.999
America	0.313	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000317

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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