SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000318_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

G (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Karitiana	America	7	0.071

Brahui	Central-South Asia	17	0.029
Sindhi	Central-South Asia	12	0.042

Han	East Asia	23	0.022
Japanese	East Asia	19	0.026
Yakut	East Asia	21	0.024

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.000	0.000	0.000
Central-South Asia	0.239	0.156	0.137	0.209
East Asia	0.193	0.196	0.194	0.146	0.165
Oceania	0.000	0.000	0.000	0.004	0.065	0.000
America	0.000	0.000	0.000	0.003	0.001	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	0.659	0.855	0.998	0.150
East Asia	0.981	0.859	0.972	0.972	0.994
Oceania	1.000	1.000	1.000	0.990	0.998	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000318

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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