SelenoDB: selenoproteins database

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Release 2.0

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Variant Report for SNP00000322_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

Variant

T (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Biaka	Africa	17	0.029

Han	East Asia	29	0.034
Naxi	East Asia	7	0.143
Yakut	East Asia	21	0.024

Bergamo	Europe	11	0.045
French	Europe	19	0.026

Bedouin	Middle East	43	0.012

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.002
Middle East	0.217	0.001
Europe	0.210	0.158	0.144
Central-South Asia	0.002	0.027	0.123	0.000
East Asia	0.144	0.131	0.127	0.167	0.170
Oceania	0.001	0.000	0.004	0.000	0.088	0.000
America	0.001	0.000	0.003	0.000	0.008	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	0.520	0.637
Europe	0.550	0.556	0.132
Central-South Asia	1.000	1.000	0.987	1.000
East Asia	1.000	0.999	0.987	0.998	0.077
Oceania	1.000	1.000	0.992	1.000	0.998	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000322

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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