SelenoDB
Release 2.0
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Variant Report for SNP00000323_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT_
VariantT (G in the Reference genome)
State Derived (G in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 11 0.045
Mbuti Africa 10 0.050
N_Bantu Africa 9 0.056
San Africa 4 0.125
Maya America 11 0.091
Surui America 6 0.083
Balochi Central-South Asia 14 0.036
Kalash Central-South Asia 19 0.053
Makrani Central-South Asia 15 0.067
Pathan Central-South Asia 21 0.024
Dai East Asia 7 0.071
Daur East Asia 5 0.100
Han East Asia 25 0.100
Hezhen East Asia 8 0.062
Japanese East Asia 16 0.062
Lahu East Asia 4 0.125
Miaozu East Asia 9 0.056
Mongola East Asia 7 0.071
Naxi East Asia 5 0.200
Tu East Asia 9 0.111
Tujia East Asia 5 0.100
Yakut East Asia 14 0.107
Adygei Europe 11 0.045
Basque Europe 19 0.053
Bergamo Europe 7 0.143
French Europe 17 0.059
Orcadian Europe 10 0.050
Russian Europe 16 0.031
Sardinian Europe 17 0.029
Druze Middle East 25 0.040
Mozabite Middle East 19 0.105
Palestinian Middle East 34 0.029
Melanesian Oceania 9 0.111
Papuan Oceania 9 0.167
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.156
Middle East0.4180.488
Europe0.5330.1870.012
Central-South Asia0.2630.2950.2260.243
East Asia0.3880.1950.0150.3900.082
Oceania0.4870.2740.0350.5110.0530.000
America0.2180.1060.0140.2100.1120.0520.454

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.274
Middle East0.0000.002
Europe0.0000.0040.824
Central-South Asia0.0000.0000.0000.000
East Asia0.0000.0010.6800.0000.000
Oceania0.0000.0010.0110.0000.2020.999
America0.0070.0380.2510.0000.0000.0170.001

Low P-value

High P-value

VariantIDSNP00000323
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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