SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000327_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

G (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Hazara	Central-South Asia	21	0.024

Daur	East Asia	7	0.143
Hezhen	East Asia	9	0.111
Japanese	East Asia	26	0.115
Mongola	East Asia	10	0.100
She	East Asia	8	0.062
Xibo	East Asia	8	0.188
Yakut	East Asia	25	0.020

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.000	0.000	0.000
Central-South Asia	0.108	0.056	0.041	0.083
East Asia	0.367	0.391	0.377	0.341	0.278
Oceania	0.000	0.000	0.000	0.001	0.217	0.000
America	0.000	0.000	0.000	0.000	0.039	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	0.996
East Asia	0.000	0.000	0.000	0.000	0.000
Oceania	1.000	1.000	1.000	1.000	0.003	0.999
America	1.000	1.000	1.000	1.000	0.369	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000327

Variant release

2.0

External ID

rs1050614 (dbSNP)

Sequence

SEQ00000004_2.0

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