SelenoDB
Release 2.0
Chart Advanced
Variant Report for SNP00000330_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantT (C in the Reference genome)
State Derived (C in the Ancestral genome)
Type Non-synonymous (CCC=P to CTC=L)
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 21 0.167
Mandenka Africa 16 0.438
Mbuti Africa 13 0.154
N_Bantu Africa 11 0.455
San Africa 5 0.400
SE_Bantu Africa 4 0.250
SW_Bantu Africa 3 0.333
Yoruba Africa 22 0.295
Maya America 20 0.050
Balochi Central-South Asia 22 0.364
Brahui Central-South Asia 18 0.444
Burusho Central-South Asia 22 0.250
Hazara Central-South Asia 20 0.400
Kalash Central-South Asia 19 0.342
Makrani Central-South Asia 23 0.457
Pathan Central-South Asia 22 0.295
Sindhi Central-South Asia 16 0.344
Uygur Central-South Asia 9 0.389
Dai East Asia 7 0.143
Daur East Asia 5 0.300
Han East Asia 32 0.031
Hezhen East Asia 7 0.071
Japanese East Asia 21 0.048
Lahu East Asia 8 0.188
Oroqen East Asia 8 0.250
Tu East Asia 8 0.062
Tujia East Asia 9 0.056
Xibo East Asia 7 0.071
Yakut East Asia 25 0.260
Yizu East Asia 10 0.200
Adygei Europe 16 0.281
Basque Europe 18 0.500
Bergamo Europe 11 0.273
French Europe 25 0.360
Orcadian Europe 15 0.233
Russian Europe 22 0.273
Sardinian Europe 27 0.278
Tuscan Europe 6 0.167
Bedouin Middle East 44 0.284
Druze Middle East 36 0.472
Mozabite Middle East 28 0.304
Palestinian Middle East 43 0.302
Melanesian Oceania 13 0.077
Papuan Oceania 16 0.188
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.044
Middle East0.0290.028
Europe0.0300.0260.028
Central-South Asia0.0290.0140.0240.011
East Asia0.1810.1500.1380.1870.273
Oceania0.1060.1010.0790.1290.1520.033
America0.2910.2260.2220.2820.1170.0770.189

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.089
Middle East0.5750.140
Europe0.1650.0490.002
Central-South Asia0.6260.1650.0000.253
East Asia0.0000.0000.0000.0000.000
Oceania0.0020.0000.0000.0000.0000.089
America0.0000.0000.0000.0000.0000.0000.098

Low P-value

High P-value

VariantIDSNP00000330
Variant release2.0
External IDrs1050450 (dbSNP)
SequenceSEQ00000004_2.0
Chart Advanced

© 2007-2024 SelenoDB
- A public source of selenium -