SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000335_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

G (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Brahui	Central-South Asia	16	0.031
Pathan	Central-South Asia	23	0.022
Sindhi	Central-South Asia	15	0.033

Dai	East Asia	5	0.100
Miaozu	East Asia	9	0.056

Sardinian	Europe	23	0.022

Druze	Middle East	32	0.016

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.244	0.167
Europe	0.121	0.153	0.209
Central-South Asia	0.321	0.247	0.244	0.300
East Asia	0.073	0.057	0.064	0.050	0.051
Oceania	0.000	0.000	0.000	0.003	0.039	0.000
America	0.000	0.000	0.000	0.002	0.002	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	0.570	0.199
Europe	1.000	0.913	0.677
Central-South Asia	0.006	0.065	0.092	0.001
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	1.000	1.000	1.000	0.935	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000335

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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