SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000336_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

T (G in the Reference genome)

State

Derived (G in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Brahui	Central-South Asia	17	0.029
Sindhi	Central-South Asia	13	0.038

Han	East Asia	24	0.042
Naxi	East Asia	5	0.100

Sardinian	Europe	25	0.020

Druze	Middle East	33	0.015

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.244	0.167
Europe	0.139	0.176	0.233
Central-South Asia	0.213	0.165	0.202	0.191
East Asia	0.124	0.099	0.109	0.100	0.078
Oceania	0.000	0.000	0.000	0.003	0.038	0.000
America	0.000	0.000	0.000	0.002	0.008	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	0.539	0.205
Europe	1.000	0.692	0.409
Central-South Asia	0.908	0.593	0.545	0.217
East Asia	1.000	1.000	1.000	1.000	0.915
Oceania	1.000	1.000	1.000	0.997	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000336

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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