SelenoDB
Release 2.0
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Variant Report for SNP00000338_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantG (T in the Reference genome)
State Derived (T in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Makrani Central-South Asia 18 0.028
Pathan Central-South Asia 23 0.022
Cambodian East Asia 8 0.062
Dai East Asia 3 0.167
Daur East Asia 7 0.071
Han East Asia 20 0.050
Japanese East Asia 17 0.059
Mongola East Asia 7 0.071
Naxi East Asia 5 0.200
She East Asia 3 0.167
Xibo East Asia 7 0.071
Yakut East Asia 14 0.036
Sardinian Europe 19 0.026
Bedouin Middle East 41 0.012
Druze Middle East 29 0.017
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.000
Middle East0.0000.004
Europe0.0010.0020.002
Central-South Asia0.0010.0030.0020.005
East Asia0.0360.0640.0420.0510.037
Oceania0.0000.0000.0000.0010.0430.000
America0.0000.0000.0000.0010.0400.0000.000

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa1.000
Middle East1.0000.242
Europe1.0001.0001.000
Central-South Asia1.0000.9351.0000.738
East Asia0.7970.0030.0010.0000.000
Oceania1.0001.0001.0001.0000.0950.999
America1.0001.0001.0001.0000.0151.0001.000

Low P-value

High P-value

VariantIDSNP00000338
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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