SelenoDB
Release 2.0
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Variant Report for SNP00000339_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantG (C in the Reference genome)
State Derived (C in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 15 0.033
Mandenka Africa 12 0.208
Surui America 6 0.083
Balochi Central-South Asia 21 0.024
Hazara Central-South Asia 10 0.300
Makrani Central-South Asia 20 0.025
Pathan Central-South Asia 22 0.023
Sindhi Central-South Asia 12 0.042
Uygur Central-South Asia 6 0.250
Cambodian East Asia 4 0.250
Dai East Asia 1 0.500
Daur East Asia 6 0.333
Han East Asia 16 0.250
Japanese East Asia 17 0.147
Lahu East Asia 3 0.500
Miaozu East Asia 8 0.062
Mongola East Asia 5 0.300
Naxi East Asia 4 0.500
She East Asia 4 0.375
Tu East Asia 5 0.200
Tujia East Asia 8 0.062
Xibo East Asia 4 0.250
Yakut East Asia 14 0.143
Yizu East Asia 7 0.143
Basque Europe 12 0.083
Bergamo Europe 6 0.083
French Europe 13 0.077
Orcadian Europe 9 0.222
Russian Europe 15 0.067
Sardinian Europe 17 0.118
Bedouin Middle East 40 0.037
Druze Middle East 28 0.089
Palestinian Middle East 42 0.036
Melanesian Oceania 11 0.045
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.039
Middle East0.5370.181
Europe0.3910.3040.293
Central-South Asia0.4550.2600.3620.440
East Asia0.6380.2910.3560.3890.043
Oceania0.3730.1310.2400.2130.3040.029
America0.1560.0590.1240.1040.1060.1020.370

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.639
Middle East0.0000.011
Europe0.0000.0000.000
Central-South Asia0.0000.0000.0000.000
East Asia0.0000.0000.0000.0000.000
Oceania0.0000.1120.0010.0020.0000.089
America0.0940.0080.0010.0000.0000.2670.020

Low P-value

High P-value

VariantIDSNP00000339
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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