SelenoDB
Release 2.0
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Variant Report for SNP00000340_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantG (T in the Reference genome)
State Derived (T in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Mandenka Africa 14 0.143
Pima America 9 0.056
Surui America 6 0.083
Balochi Central-South Asia 16 0.031
Brahui Central-South Asia 14 0.036
Hazara Central-South Asia 15 0.200
Makrani Central-South Asia 19 0.026
Pathan Central-South Asia 22 0.023
Sindhi Central-South Asia 14 0.107
Uygur Central-South Asia 3 0.167
Dai East Asia 4 0.500
Daur East Asia 4 0.250
Han East Asia 19 0.289
Japanese East Asia 13 0.154
Lahu East Asia 5 0.400
Miaozu East Asia 7 0.214
Mongola East Asia 7 0.286
Naxi East Asia 6 0.417
Oroqen East Asia 3 0.167
She East Asia 5 0.300
Tu East Asia 5 0.300
Tujia East Asia 5 0.200
Xibo East Asia 4 0.250
Yakut East Asia 15 0.233
Yizu East Asia 6 0.083
Basque Europe 11 0.182
French Europe 16 0.031
Orcadian Europe 7 0.286
Russian Europe 14 0.107
Sardinian Europe 15 0.167
Bedouin Middle East 34 0.029
Druze Middle East 25 0.100
Palestinian Middle East 39 0.026
Melanesian Oceania 12 0.042
Papuan Oceania 10 0.050
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.023
Middle East0.0220.032
Europe0.0330.0360.042
Central-South Asia0.0330.0380.0400.052
East Asia0.2360.2980.1930.2430.052
Oceania0.0190.0140.0150.0220.1860.000
America0.0310.0300.0310.0370.2080.0130.061

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.972
Middle East0.6230.015
Europe0.6210.0030.003
Central-South Asia0.4550.0010.0000.000
East Asia0.0000.0000.0000.0000.002
Oceania0.2540.5850.0300.3960.0000.999
America0.1820.0900.0320.0100.0000.6600.012

Low P-value

High P-value

VariantIDSNP00000340
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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