SelenoDB
Release 2.0
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Variant Report for SNP00000342_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantG (C in the Reference genome)
State Derived (C in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 15 0.033
Mandenka Africa 11 0.091
San Africa 3 0.167
Yoruba Africa 20 0.025
Hazara Central-South Asia 11 0.182
Makrani Central-South Asia 14 0.036
Pathan Central-South Asia 19 0.026
Sindhi Central-South Asia 13 0.038
Dai East Asia 2 0.250
Daur East Asia 3 0.167
Han East Asia 11 0.273
Hezhen East Asia 5 0.100
Japanese East Asia 11 0.091
Lahu East Asia 1 0.500
Miaozu East Asia 5 0.100
Naxi East Asia 5 0.400
She East Asia 3 0.167
Tu East Asia 6 0.250
Tujia East Asia 6 0.167
Xibo East Asia 7 0.214
Yakut East Asia 13 0.077
Basque Europe 12 0.083
French Europe 15 0.100
Orcadian Europe 11 0.091
Sardinian Europe 15 0.067
Tuscan Europe 7 0.071
Bedouin Middle East 36 0.028
Palestinian Middle East 37 0.014
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.225
Middle East0.3000.333
Europe0.3170.3770.381
Central-South Asia0.2450.3510.4290.553
East Asia0.3390.4380.2520.4230.203
Oceania0.0420.0000.0370.0030.5090.000
America0.0350.0010.0290.0030.1450.0000.000

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.000
Middle East0.0030.030
Europe0.0000.0000.000
Central-South Asia0.0000.0010.0000.000
East Asia0.0000.0000.0000.0000.000
Oceania0.7090.9630.0270.8670.0000.999
America0.9411.0000.0241.0000.0001.0001.000

Low P-value

High P-value

VariantIDSNP00000342
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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