SelenoDB
Release 2.0
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Variant Report for SNP00000343_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantG (T in the Reference genome)
State Derived (T in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 15 0.033
Mandenka Africa 14 0.036
Surui America 6 0.083
Balochi Central-South Asia 19 0.053
Hazara Central-South Asia 11 0.045
Pathan Central-South Asia 21 0.024
Sindhi Central-South Asia 14 0.036
Uygur Central-South Asia 7 0.143
Cambodian East Asia 5 0.100
Japanese East Asia 10 0.050
Mongola East Asia 6 0.083
Naxi East Asia 6 0.167
Tu East Asia 7 0.071
Tujia East Asia 6 0.167
Xibo East Asia 5 0.100
Yakut East Asia 19 0.079
Yizu East Asia 8 0.062
Basque Europe 15 0.033
French Europe 15 0.033
Russian Europe 17 0.029
Bedouin Middle East 36 0.014
Melanesian Oceania 10 0.050
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.004
Middle East0.0080.002
Europe0.0040.0100.006
Central-South Asia0.0190.0430.0210.043
East Asia0.0530.1440.0600.0680.034
Oceania0.0090.0300.0100.0240.0490.029
America0.0110.0310.0120.0280.0570.0170.026

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.993
Middle East1.0000.531
Europe1.0000.8320.519
Central-South Asia0.9720.0850.0300.000
East Asia0.0000.0000.0000.0000.000
Oceania0.9410.2060.3390.1340.0320.089
America0.9970.9850.8380.4840.0000.5540.440

Low P-value

High P-value

VariantIDSNP00000343
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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