SelenoDB
Release 2.0
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Variant Report for SNP00000344_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantG (T in the Reference genome)
State Derived (T in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 15 0.033
Mandenka Africa 13 0.346
Yoruba Africa 19 0.026
Pima America 9 0.056
Surui America 5 0.100
Balochi Central-South Asia 16 0.031
Burusho Central-South Asia 17 0.029
Hazara Central-South Asia 17 0.412
Kalash Central-South Asia 16 0.031
Pathan Central-South Asia 19 0.026
Sindhi Central-South Asia 10 0.050
Uygur Central-South Asia 7 0.286
Cambodian East Asia 3 0.333
Dai East Asia 4 0.500
Daur East Asia 4 0.375
Han East Asia 14 0.429
Hezhen East Asia 5 0.200
Japanese East Asia 14 0.321
Lahu East Asia 4 0.375
Miaozu East Asia 9 0.389
Mongola East Asia 5 0.300
Naxi East Asia 6 0.417
Oroqen East Asia 3 0.500
She East Asia 5 0.400
Tu East Asia 4 0.500
Tujia East Asia 8 0.250
Xibo East Asia 6 0.333
Yakut East Asia 15 0.400
Yizu East Asia 7 0.286
Adygei Europe 8 0.062
Basque Europe 14 0.357
French Europe 11 0.318
Orcadian Europe 9 0.444
Russian Europe 13 0.231
Sardinian Europe 18 0.194
Bedouin Middle East 32 0.062
Druze Middle East 18 0.167
Mozabite Middle East 23 0.022
Palestinian Middle East 30 0.017
Melanesian Oceania 11 0.091
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.075
Middle East0.0500.010
Europe0.1980.2900.046
Central-South Asia0.0980.1020.1930.152
East Asia0.2380.3570.0210.2330.010
Oceania0.0430.0210.1930.0780.2340.060
America0.0460.0220.1860.0800.2280.0350.065

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.433
Middle East0.9660.176
Europe0.0000.0000.018
Central-South Asia0.1110.0920.0000.000
East Asia0.0000.0000.3170.0000.732
Oceania0.1000.2730.0000.0010.0000.075
America0.0640.2030.0000.0000.0000.2350.012

Low P-value

High P-value

VariantIDSNP00000344
Variant release2.0
External IDNone
SequenceSEQ00000004_2.0
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