SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000346_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

T (G in the Reference genome)

State

Derived (G in the Ancestral genome)

Type

Synonymous (CCG to CCT)

Populations

Name	Region	# Individuals	Allele Frequency
Mandenka	Africa	16	0.031
N_Bantu	Africa	9	0.056

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.106
Middle East	0.018	0.000
Europe	0.009	0.000	0.000
Central-South Asia	0.009	0.000	0.000	0.000
East Asia	0.005	0.000	0.000	0.000	0.000
Oceania	0.005	0.000	0.000	0.000	0.000	0.000
America	0.005	0.000	0.000	0.000	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.987
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	0.998	1.000	1.000	1.000	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000346

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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