SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000349_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

A (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Balochi	Central-South Asia	22	0.091
Brahui	Central-South Asia	17	0.118
Kalash	Central-South Asia	17	0.029
Makrani	Central-South Asia	21	0.024
Pathan	Central-South Asia	22	0.023
Sindhi	Central-South Asia	15	0.033

Sardinian	Europe	24	0.021

Bedouin	Middle East	44	0.057
Druze	Middle East	35	0.014
Mozabite	Middle East	29	0.017

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.005	0.018
Europe	0.000	0.008	0.001
Central-South Asia	0.017	0.024	0.022	0.026
East Asia	0.000	0.005	0.000	0.016	0.000
Oceania	0.000	0.006	0.000	0.018	0.000	0.000
America	0.000	0.005	0.000	0.018	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	0.999	0.032
Europe	1.000	0.333	1.000
Central-South Asia	0.798	0.021	0.002	0.000
East Asia	1.000	0.997	1.000	0.964	1.000
Oceania	1.000	0.915	1.000	0.062	1.000	0.999
America	1.000	0.958	1.000	0.086	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000349

Variant release

2.0

External ID

rs41276539 (dbSNP)

Sequence

SEQ00000004_2.0

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