SelenoDB
Release 2.0
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Variant Report for SNP00000351_2.0
Identity
GeneGlutathione peroxidase 1 (GPx1)
SpeciesHomo sapiens (Human)
TranscriptSPT00000017_2.0
VariantT (C in the Reference genome)
State Derived (C in the Ancestral genome)
Type Non-coding
Populations
Name Region # Individuals Allele Frequency
Biaka Africa 22 0.159
Mandenka Africa 16 0.312
Mbuti Africa 13 0.077
N_Bantu Africa 11 0.409
SE_Bantu Africa 4 0.250
SW_Bantu Africa 3 0.333
Yoruba Africa 22 0.227
Maya America 20 0.050
Balochi Central-South Asia 22 0.364
Brahui Central-South Asia 18 0.444
Burusho Central-South Asia 22 0.250
Hazara Central-South Asia 21 0.381
Kalash Central-South Asia 20 0.325
Makrani Central-South Asia 23 0.370
Pathan Central-South Asia 22 0.273
Sindhi Central-South Asia 17 0.294
Uygur Central-South Asia 9 0.389
Dai East Asia 7 0.143
Daur East Asia 8 0.312
Han East Asia 28 0.036
Hezhen East Asia 9 0.111
Japanese East Asia 21 0.048
Lahu East Asia 5 0.200
Oroqen East Asia 6 0.333
Tu East Asia 8 0.062
Tujia East Asia 10 0.050
Xibo East Asia 7 0.071
Yakut East Asia 25 0.260
Yizu East Asia 10 0.200
Adygei Europe 14 0.321
Basque Europe 24 0.458
Bergamo Europe 10 0.250
French Europe 27 0.370
Orcadian Europe 15 0.233
Russian Europe 23 0.304
Sardinian Europe 24 0.312
Tuscan Europe 7 0.214
Bedouin Middle East 43 0.256
Druze Middle East 36 0.431
Mozabite Middle East 28 0.286
Palestinian Middle East 44 0.284
Melanesian Oceania 13 0.077
Papuan Oceania 15 0.200
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.138
Middle East0.0980.023
Europe0.1030.0150.016
Central-South Asia0.1040.0130.0120.009
East Asia0.1800.1180.1300.1520.267
Oceania0.1580.0780.0820.1050.1500.043
America0.2210.2020.2310.2590.1390.0830.189

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.000
Middle East0.2240.163
Europe0.0440.6010.044
Central-South Asia0.0390.0670.3520.515
East Asia0.0000.0000.0000.0000.000
Oceania0.0020.0020.0000.0000.0000.080
America0.0000.0000.0000.0000.0000.0020.100

Low P-value

High P-value

VariantIDSNP00000351
Variant release2.0
External IDrs1800668 (dbSNP)
SequenceSEQ00000004_2.0
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