SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000352_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

T (C in the Reference genome)

State

Derived (C in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
Han	East Asia	28	0.018
Hezhen	East Asia	8	0.125
Japanese	East Asia	20	0.025
Naxi	East Asia	5	0.100
Oroqen	East Asia	7	0.071
She	East Asia	7	0.143
Yakut	East Asia	24	0.021

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.000
Middle East	0.000	0.000
Europe	0.000	0.000	0.000
Central-South Asia	0.000	0.000	0.000	0.000
East Asia	0.384	0.400	0.390	0.392	0.264
Oceania	0.000	0.000	0.000	0.000	0.181	0.000
America	0.000	0.000	0.000	0.000	0.027	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	1.000
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	0.000	0.000	0.000	0.000	0.000
Oceania	1.000	1.000	1.000	1.000	0.053	0.999
America	1.000	1.000	1.000	1.000	0.963	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000352

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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