SelenoDB: selenoproteins database

SelenoDB

Release 2.0

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Variant Report for SNP00000354_2.0

Gene

Glutathione peroxidase 1 (GPx1)

Species

Homo sapiens (Human)

Transcript

SPT00000017_2.0

Variant

C (A in the Reference genome)

State

Derived (A in the Ancestral genome)

Type

Non-coding

Populations

Name	Region	# Individuals	Allele Frequency
San	Africa	4	0.125

Genetic
Differentiation

F_ST

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.148
Middle East	0.052	0.000
Europe	0.029	0.000	0.000
Central-South Asia	0.031	0.000	0.000	0.000
East Asia	0.020	0.000	0.000	0.000	0.000
Oceania	0.027	0.000	0.000	0.000	0.000	0.000
America	0.021	0.000	0.000	0.000	0.000	0.000	0.000

High F_ST

Low F_ST

P-value

	Africa	Middle East	Europe	Central-South Asia	East Asia	Oceania	America
Africa	0.706
Middle East	1.000	1.000
Europe	1.000	1.000	1.000
Central-South Asia	1.000	1.000	1.000	1.000
East Asia	1.000	1.000	1.000	1.000	1.000
Oceania	1.000	1.000	1.000	1.000	1.000	0.999
America	1.000	1.000	1.000	1.000	1.000	1.000	1.000

Low P-value

High P-value

VariantID

SNP00000354

Variant release

2.0

External ID

None

Sequence

SEQ00000004_2.0

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